BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0596300 Os06g0596300|AK120303
(357 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08510.1 | chr1:2691546-2693409 REVERSE LENGTH=413 378 e-105
AT3G25110.1 | chr3:9146589-9148273 REVERSE LENGTH=363 211 3e-55
AT4G13050.1 | chr4:7617739-7619355 FORWARD LENGTH=368 211 4e-55
>AT1G08510.1 | chr1:2691546-2693409 REVERSE LENGTH=413
Length = 412
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 216/286 (75%), Gaps = 14/286 (4%)
Query: 59 AIPKVNG------GSSALADPEHDTMXXXXXXAAPRTFYNQLPDWSMXXXXXXXXXXXXE 112
A PK+NG GS + + +T APRTF NQLPDWSM E
Sbjct: 52 APPKINGKKVGLPGSVDIVRTDTET----SSHPAPRTFINQLPDWSMLLAAITTIFLAAE 107
Query: 113 KQWTLLDWKPKRPDMLTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQE 172
KQW +LDWKP+R DML D FG GR++ +GL+FRQNFSIRSYEIGADR+ASIET+MNHLQE
Sbjct: 108 KQWMMLDWKPRRSDMLVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASIETVMNHLQE 167
Query: 173 TALNHVKSAGLLGDGFGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKN 232
TALNHVK+AGLLGDGFGSTPEM K++L WVV++MQ +V++YP WGD VEVDTWV GKN
Sbjct: 168 TALNHVKTAGLLGDGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVDTWVSQSGKN 227
Query: 233 GMRRDWHIRDSVTGHTILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIVDEDN 292
GMRRDW +RD TG T+ +A+S WVMM+KLTRRL++IP+EVR EIEPYF ++ ED+
Sbjct: 228 GMRRDWLVRDCNTGETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFVNSDPVLAEDS 287
Query: 293 QKLPKLPDIEGANVAKYVRTGLTPRWADLDINQHVNNVKYIGWILE 338
+KL K+ D A YVR+GLTPRW+DLD+NQHVNNVKYIGWILE
Sbjct: 288 RKLTKIDD----KTADYVRSGLTPRWSDLDVNQHVNNVKYIGWILE 329
>AT3G25110.1 | chr3:9146589-9148273 REVERSE LENGTH=363
Length = 362
Score = 211 bits (538), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 98/213 (46%), Positives = 141/213 (66%), Gaps = 4/213 (1%)
Query: 128 LTDTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKSAGLLGDG 187
L D G + +GL +++ F +RSYE+G+++TA++ET+ N LQE NH +S G DG
Sbjct: 68 LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127
Query: 188 FGSTPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHIRDSVTGH 247
F +T M K L WV ++M + +YP WGD VE++TW + G+ G RRDW ++DSVTG
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187
Query: 248 TILKATSKWVMMHKLTRRLARIPDEVRTEIEPYFFEHASIV--DEDNQKLPKLPDIEGAN 305
+ATSKWVMM++ TRRL ++ D+VR E + + + +E+N+ L K+P +E +
Sbjct: 188 VTGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPQEPRLAFPEENNRSLKKIPKLE--D 245
Query: 306 VAKYVRTGLTPRWADLDINQHVNNVKYIGWILE 338
A+Y GL PR ADLD+NQHVNNV YIGW+LE
Sbjct: 246 PAQYSMIGLKPRRADLDMNQHVNNVTYIGWVLE 278
>AT4G13050.1 | chr4:7617739-7619355 FORWARD LENGTH=368
Length = 367
Score = 211 bits (537), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 139/215 (64%), Gaps = 12/215 (5%)
Query: 130 DTFGFGRMIHEGLMFRQNFSIRSYEIGADRTASIETLMNHLQETALNHVKSAGLLGDGFG 189
D FGR++ +G +++ F +RSYE+G ++TA+IET+ N LQE A NHV++ G DGF
Sbjct: 69 DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128
Query: 190 STPEMSKRDLFWVVSQMQAIVERYPCWGDTVEVDTWVGAHGKNGMRRDWHIRDSVTGHTI 249
+T M K L WV ++M + +YP W D VE++TW + G+ G RRDW ++D TG I
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188
Query: 250 LKATSKWVMMHKLTRRLARIPDEVRTEI------EPYFFEHASIVDEDNQKLPKLPDIEG 303
+ATSKWVMM++ TRRL R+ DEVR E EP + +E+N L K+P +E
Sbjct: 189 GRATSKWVMMNQDTRRLQRVTDEVRDEYLVFCPPEPRL----AFPEENNSSLKKIPKLED 244
Query: 304 ANVAKYVRTGLTPRWADLDINQHVNNVKYIGWILE 338
A+Y GL PR ADLD+NQHVNNV YIGW+LE
Sbjct: 245 P--AQYSMLGLKPRRADLDMNQHVNNVTYIGWVLE 277
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,246,171
Number of extensions: 280552
Number of successful extensions: 528
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 3
Length of query: 357
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,364,969
Effective search space: 2149797033
Effective search space used: 2149797033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)