BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0592400 Os06g0592400|AK062788
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24503.1 | chr3:8919732-8923029 REVERSE LENGTH=502 124 7e-30
AT3G48000.1 | chr3:17717082-17719843 REVERSE LENGTH=539 104 7e-24
AT1G23800.1 | chr1:8412238-8414804 REVERSE LENGTH=535 104 1e-23
AT3G48170.1 | chr3:17786290-17789918 REVERSE LENGTH=504 77 2e-15
AT1G74920.1 | chr1:28139175-28142573 REVERSE LENGTH=502 76 3e-15
AT1G79440.1 | chr1:29882525-29887275 REVERSE LENGTH=529 54 1e-08
AT3G66658.2 | chr3:2095341-2099013 REVERSE LENGTH=597 51 1e-07
>AT3G24503.1 | chr3:8919732-8923029 REVERSE LENGTH=502
Length = 501
Score = 124 bits (312), Expect = 7e-30, Method: Composition-based stats.
Identities = 52/90 (57%), Positives = 70/90 (77%)
Query: 14 RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKM 73
+TVEE I+ AN T+YGLAAG++++DID+ N ++RSI+AG++WVNCYF D CP+GG KM
Sbjct: 411 KTVEEGIKCANNTKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKM 470
Query: 74 SGFGKDDSMHALDKFLAVKSVVTPVHGSPW 103
SG ++ M ALD +L KSVV P+H SPW
Sbjct: 471 SGNCRESGMDALDNYLQTKSVVMPLHNSPW 500
>AT3G48000.1 | chr3:17717082-17719843 REVERSE LENGTH=539
Length = 538
Score = 104 bits (260), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/88 (48%), Positives = 68/88 (77%)
Query: 16 VEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMSG 75
V+E I+RAN T+YGLAAG+ T+++D ANR++R+++AG VWVNC+ D + PFGG KMSG
Sbjct: 450 VDEVIKRANETKYGLAAGVFTKNLDTANRVSRALKAGTVWVNCFDVFDAAIPFGGYKMSG 509
Query: 76 FGKDDSMHALDKFLAVKSVVTPVHGSPW 103
G++ +++L+ +L +K+VVT ++ W
Sbjct: 510 NGREKGIYSLNNYLQIKAVVTALNKPAW 537
>AT1G23800.1 | chr1:8412238-8414804 REVERSE LENGTH=535
Length = 534
Score = 104 bits (259), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 66/91 (72%)
Query: 14 RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKM 73
+ ++E I RAN +RYGLAAG+ T+++D A+R+ R++R G VW+NC+ +D S PFGG KM
Sbjct: 444 KDLDEVIARANNSRYGLAAGVFTQNLDTAHRLMRALRVGTVWINCFDVLDASIPFGGYKM 503
Query: 74 SGFGKDDSMHALDKFLAVKSVVTPVHGSPWF 104
SG G++ +++L+ +L VK+VVT + W
Sbjct: 504 SGIGREKGIYSLNNYLQVKAVVTSLKNPAWL 534
>AT3G48170.1 | chr3:17786290-17789918 REVERSE LENGTH=504
Length = 503
Score = 77.0 bits (188), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 57/89 (64%)
Query: 15 TVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMS 74
T +EAI+ AN ++YGLA +++ D++ +R++++ +AG+VWVNC P+GG K S
Sbjct: 406 TEDEAIQLANDSQYGLAGAVLSNDLERCDRVSKAFQAGIVWVNCSQPCFCQAPWGGTKRS 465
Query: 75 GFGKDDSMHALDKFLAVKSVVTPVHGSPW 103
GFG++ L+ +L+VK V + PW
Sbjct: 466 GFGRELGEWGLENYLSVKQVTQYISDEPW 494
>AT1G74920.1 | chr1:28139175-28142573 REVERSE LENGTH=502
Length = 501
Score = 76.3 bits (186), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 17 EEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKMSGF 76
+EAIE AN + YGL A +++ D + +R++ + AG+VW+NC P+GG K SGF
Sbjct: 408 DEAIELANDSHYGLGAAVISNDTERCDRISEAFEAGIVWINCSQPCFTQAPWGGVKRSGF 467
Query: 77 GKDDSMHALDKFLAVKSVVTPVHGSPW 103
G++ LD +L+VK V PW
Sbjct: 468 GRELGEWGLDNYLSVKQVTLYTSNDPW 494
>AT1G79440.1 | chr1:29882525-29887275 REVERSE LENGTH=529
Length = 528
Score = 54.3 bits (129), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 46/81 (56%)
Query: 14 RTVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFAMDRSCPFGGRKM 73
+T E+AI AN T GLAA + T + + R+ ++ G+V VN PFGG K
Sbjct: 440 KTEEDAIRIANDTIAGLAAYIFTNSVQRSWRVFEALEYGLVGVNEGLISTEVAPFGGVKQ 499
Query: 74 SGFGKDDSMHALDKFLAVKSV 94
SG G++ S + +D++L +K V
Sbjct: 500 SGLGREGSKYGMDEYLEIKYV 520
>AT3G66658.2 | chr3:2095341-2099013 REVERSE LENGTH=597
Length = 596
Score = 50.8 bits (120), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 15 TVEEAIERANGTRYGLAAGLVTRDIDVANRMARSIRAGVVWVNCYFA--MDRSCPFGGRK 72
T EE I+ AN +RY L + + A ++A I+ GV +N + + M +S PFGG K
Sbjct: 446 TDEEVIKLANDSRYALGCAVFSGSKHRAKQIASQIQCGVAAINDFASNYMCQSLPFGGVK 505
Query: 73 MSGFGKDDSMHALDKFLAVKSVV 95
SGFG+ + L VKSVV
Sbjct: 506 DSGFGRFAGIEGLRACCLVKSVV 528
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,164,933
Number of extensions: 73197
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 7
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)