BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0581300 Os06g0581300|AK070987
         (255 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G22750.4  | chr1:8050911-8052714 FORWARD LENGTH=258            200   6e-52

>AT1G22750.4 | chr1:8050911-8052714 FORWARD LENGTH=258
          Length = 257

 Score =  200 bits (509), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 101/242 (41%), Positives = 147/242 (60%), Gaps = 6/242 (2%)

Query: 1   MAAAGSIGVYRAVFAALGALMLGTLVYTCVTDGSPF--RLELLTPWLVATLIDFYVNVTA 58
           MA    +   + V   +  LML TLVYT +TDG P   R ++ TPW V T++DFY+N+  
Sbjct: 1   MATTSLVTGLKVVLPVMFCLMLATLVYTIITDGLPLPDRQDVFTPWFVTTILDFYINLVP 60

Query: 59  ISTWVIYKEVNWISSFFWVVLLYCFGSIATCAYVVVKLFEIKTSGPSQDPLDLLFLRQ-- 116
           I+ W++YKE  W  S  W +LL  FGS+ TC Y+ ++L ++     S+DP+  L LR   
Sbjct: 61  IAVWIVYKESTWSGSILWTILLIIFGSLTTCVYLFLQLLKLTNQEASEDPMYYLLLRDSI 120

Query: 117 --GDLSERKSSFVIIGRIIFSILGAMMAAVVIYTVITDGLPFRKDLLTPWMAATLIDFYI 174
             G     K+S V+  R +F  LG +M   ++YT  T G PF  +LL PWM   L++FYI
Sbjct: 121 KDGVGLRDKNSLVVTARFVFGALGCVMLGALVYTCFTYGSPFHMELLYPWMVVLLVNFYI 180

Query: 175 NVFAISVWVAHKESNWISTAIWICLLICFGSITTCGYIVIQLFQVSYRDPIYHVLLNSHN 234
           +V  +SVWV +KES+ I   +W+ LLI  GS+ T   IV+QLF++S  DP+Y VL+N+ N
Sbjct: 181 DVAVLSVWVVYKESSLIIGILWVALLIGLGSVGTSAVIVVQLFRLSPLDPLYLVLVNNSN 240

Query: 235 KS 236
           ++
Sbjct: 241 RA 242



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,332,857
Number of extensions: 203638
Number of successful extensions: 575
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 570
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)