BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0563300 Os06g0563300|AK111494
(598 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17720.1 | chr1:6093949-6098065 REVERSE LENGTH=502 794 0.0
AT1G51690.3 | chr1:19164124-19169974 FORWARD LENGTH=604 739 0.0
>AT1G17720.1 | chr1:6093949-6098065 REVERSE LENGTH=502
Length = 501
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/498 (76%), Positives = 425/498 (85%), Gaps = 12/498 (2%)
Query: 103 PTMEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDNA- 161
P++EWRF+QVFGER AGE+VQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTD +D+
Sbjct: 14 PSLEWRFSQVFGERTAGEEVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDTKDHGG 73
Query: 162 SRREMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLS 221
SR+++E+ D P+ RHPEFRYK+EFQSHEPEFDYLKSLEIEEKINKIRWCQ AN +L LLS
Sbjct: 74 SRKDLEQTDYPV-RHPEFRYKTEFQSHEPEFDYLKSLEIEEKINKIRWCQPANGALFLLS 132
Query: 222 TNDKTIKYWXXXXXXXXXXXXMNLDXXXXXXXXXXXXXXXXXXXLLPNGGCSDKS-SFLN 280
TNDKTIKYW MN+D L+ NG +DK +L+
Sbjct: 133 TNDKTIKYWKVQEKKIKKISEMNIDPSESSNIPPQ---------LVTNGLPADKGHDYLS 183
Query: 281 SDILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDL 340
D FPPGG PSLRLPVVV SQ+ NLVARCRRVYAHAHDYHINSIS +SDGET+ISADDL
Sbjct: 184 KDFSFPPGGIPSLRLPVVVTSQETNLVARCRRVYAHAHDYHINSISNSSDGETFISADDL 243
Query: 341 RINLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQ 400
R+NLWNLEI+NQSFNIVDVKP NMEDLTEVIT AEFHP HCN LAYSSSKGSIRLID+RQ
Sbjct: 244 RVNLWNLEISNQSFNIVDVKPTNMEDLTEVITSAEFHPIHCNMLAYSSSKGSIRLIDMRQ 303
Query: 401 SALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSG 460
SALCD+H+K+FEE EAPGSRSFFTEIIASISDIKFS+DGRYILSRDYMTLKLWD+NMDSG
Sbjct: 304 SALCDSHTKLFEEPEAPGSRSFFTEIIASISDIKFSKDGRYILSRDYMTLKLWDINMDSG 363
Query: 461 PVSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEA 520
PV+++QVHEHLRP+LCDLYENDSIFDKFECCLSGDGL VATGSY NLFRVFG + GSTEA
Sbjct: 364 PVASYQVHEHLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGASQGSTEA 423
Query: 521 TTLEASRNPMRRQIVNPTRPTRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHP 580
TLEAS+NPMRRQI P RP+R++ S+ R VRRG E+ G +ANGN++DF+TKLLH+AWHP
Sbjct: 424 ATLEASKNPMRRQIQTPARPSRSIGSMTRVVRRGSESPGTEANGNAYDFTTKLLHMAWHP 483
Query: 581 TENSIACAAANSLYMYYA 598
TENSIACAAANSLYMYYA
Sbjct: 484 TENSIACAAANSLYMYYA 501
>AT1G51690.3 | chr1:19164124-19169974 FORWARD LENGTH=604
Length = 603
Score = 739 bits (1909), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/497 (72%), Positives = 407/497 (81%), Gaps = 5/497 (1%)
Query: 105 MEWRFAQVFGERAAGEDVQEVDIISAIEFDKSGDHLATGDRGGRVVLFERTDARDNA-SR 163
+EWRF+QVFGER+AGE+VQEVDIISAIEFD SG+HLATGDRGGRVVLFERTD +++ +R
Sbjct: 109 LEWRFSQVFGERSAGEEVQEVDIISAIEFDNSGNHLATGDRGGRVVLFERTDTNNSSGTR 168
Query: 164 REMERQDAPITRHPEFRYKSEFQSHEPEFDYLKSLEIEEKINKIRWCQTANNSLSLLSTN 223
RE+E D P+ RHPEFRYK+EFQSH+PEFDYLKSLEIEEKINKIRWCQTAN +L LLSTN
Sbjct: 169 RELEEADYPL-RHPEFRYKTEFQSHDPEFDYLKSLEIEEKINKIRWCQTANGALFLLSTN 227
Query: 224 DKTIKYWXXXXXXXXXXXXMNLDXXXXXX--XXXXXXXXXXXXXLLPNGGCSDKSSFLNS 281
DKTIK+W MN D L NGG S+ ++ L +
Sbjct: 228 DKTIKFWKVQDKKIKKICDMNSDPSRTVGNGTVASSSNSNITNSCLVNGGVSEVNNSLCN 287
Query: 282 DILFPPGGYPSLRLPVVVASQDVNLVARCRRVYAHAHDYHINSISTNSDGETYISADDLR 341
D P GG SLRLPVV S + + VARCRRVYAHAHDYHINSIS NSDGET+ISADDLR
Sbjct: 288 DFSLPAGGISSLRLPVVT-SHESSPVARCRRVYAHAHDYHINSISNNSDGETFISADDLR 346
Query: 342 INLWNLEINNQSFNIVDVKPPNMEDLTEVITCAEFHPTHCNTLAYSSSKGSIRLIDLRQS 401
INLWNLEI+NQSFNIVDVKP MEDL+EVIT AEFHPTHCN LAYSSSKGSIRLIDLRQS
Sbjct: 347 INLWNLEISNQSFNIVDVKPAKMEDLSEVITSAEFHPTHCNMLAYSSSKGSIRLIDLRQS 406
Query: 402 ALCDNHSKIFEEHEAPGSRSFFTEIIASISDIKFSRDGRYILSRDYMTLKLWDLNMDSGP 461
ALCD+HSK+FEE E G +SFFTEIIAS+SDIKF+++GRY+LSRDYMTLKLWD+NMD+GP
Sbjct: 407 ALCDSHSKLFEEPEQAGPKSFFTEIIASVSDIKFAKEGRYLLSRDYMTLKLWDINMDAGP 466
Query: 462 VSTFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGLHVATGSYGNLFRVFGCTPGSTEAT 521
V+TFQVHE+L+PKLCDLYENDSIFDKFECC+SG+GL ATGSY NLFRVFG PGSTE
Sbjct: 467 VATFQVHEYLKPKLCDLYENDSIFDKFECCISGNGLRAATGSYSNLFRVFGVAPGSTETA 526
Query: 522 TLEASRNPMRRQIVNPTRPTRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHPT 581
TLEASRNPMRR + P+RP+R L+S+ R V RG E+ GVD N N+ D++TKLLHLAWHP
Sbjct: 527 TLEASRNPMRRHVPIPSRPSRALSSITRVVSRGSESPGVDGNTNALDYTTKLLHLAWHPN 586
Query: 582 ENSIACAAANSLYMYYA 598
ENSIACAAANSLYMYYA
Sbjct: 587 ENSIACAAANSLYMYYA 603
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,895,258
Number of extensions: 472345
Number of successful extensions: 1218
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1212
Number of HSP's successfully gapped: 2
Length of query: 598
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 494
Effective length of database: 8,255,305
Effective search space: 4078120670
Effective search space used: 4078120670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)