BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0561000 Os06g0561000|AK103977
(308 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14520.1 | chr1:4968376-4969954 REVERSE LENGTH=312 486 e-138
AT4G26260.2 | chr4:13297939-13300146 FORWARD LENGTH=319 459 e-129
AT2G19800.1 | chr2:8531106-8533354 REVERSE LENGTH=318 451 e-127
AT5G56640.1 | chr5:22927534-22929638 REVERSE LENGTH=315 439 e-124
>AT1G14520.1 | chr1:4968376-4969954 REVERSE LENGTH=312
Length = 311
Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust.
Identities = 233/316 (73%), Positives = 263/316 (83%), Gaps = 13/316 (4%)
Query: 1 MTITIEQPHLDAIADRKVAG--------GGGGDNAAELVLDGGFVVPDSNAFGNAFRNYE 52
MTI I D +D+ AG G G + ELVLD GF P +N+FG FR+Y+
Sbjct: 1 MTILI-----DRHSDQNDAGDEIVEKNQGNGKEEETELVLDAGFEAPHTNSFGRTFRDYD 55
Query: 53 AESERKETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEFIDDSDPDL 112
AESER+ VEEFYRVNHI QT DFVR+MREEY ++++TEM IWEC ELLNEFID+SDPDL
Sbjct: 56 AESERRRGVEEFYRVNHIGQTVDFVRKMREEYEKLNRTEMSIWECCELLNEFIDESDPDL 115
Query: 113 DMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPVGC 172
D PQIEHLLQTAEAIRKD+PDEDWLHLTGLIHDLGKVLLH SFGELPQW+VVGDTFPVGC
Sbjct: 116 DEPQIEHLLQTAEAIRKDYPDEDWLHLTGLIHDLGKVLLHSSFGELPQWAVVGDTFPVGC 175
Query: 173 AFDECNVHFKYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKENKTTL 232
AFDE VH KYFKENPDY NP N+K+G Y+EGCGLDNVLMSWGHDDYMYLVAKEN+TTL
Sbjct: 176 AFDESIVHHKYFKENPDYDNPSYNSKYGIYTEGCGLDNVLMSWGHDDYMYLVAKENQTTL 235
Query: 233 PSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLYSKSNERIDVEKVKP 292
PSAGLFIIRYHSFY LHK AY HLMN+ED+EN+KWL+VFNKYDLYSKS R++VE+VKP
Sbjct: 236 PSAGLFIIRYHSFYALHKSEAYKHLMNNEDRENMKWLKVFNKYDLYSKSKVRVNVEEVKP 295
Query: 293 YYMSLIEKYFPAKLRW 308
YY+SL KYFP+KL+W
Sbjct: 296 YYLSLTNKYFPSKLKW 311
>AT4G26260.2 | chr4:13297939-13300146 FORWARD LENGTH=319
Length = 318
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/322 (68%), Positives = 254/322 (78%), Gaps = 18/322 (5%)
Query: 1 MTITIEQPHLDAIADRKVAG-GGGGDNAAELVLDGGF-------------VVPDSNAFGN 46
MTI++E+P I + +V+ GDN EL LDGGF + P+ NAFG
Sbjct: 1 MTISVEKP----IFEEEVSAFEKSGDNIGELKLDGGFSMPKMDTNDDEAFLAPEMNAFGR 56
Query: 47 AFRNYEAESERKETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEFID 106
FR+Y+ ESER++ VEEFYR+ HINQT DFV++MR EYG++DK M IWEC ELLNE +D
Sbjct: 57 QFRDYDVESERQKGVEEFYRLQHINQTVDFVKKMRAEYGKLDKMVMSIWECCELLNEVVD 116
Query: 107 DSDPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGD 166
+SDPDLD PQI+HLLQ+AEAIRKD+P+EDWLHLT LIHDLGKV+ P FG LPQW+VVGD
Sbjct: 117 ESDPDLDEPQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVITLPQFGGLPQWAVVGD 176
Query: 167 TFPVGCAFDECNVHFKYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAK 226
TFPVGCAFDE NVH KYF ENPD+ N NTK G YSEGCGL+NV+MSWGHDDYMYLVAK
Sbjct: 177 TFPVGCAFDESNVHHKYFVENPDFHNETYNTKNGIYSEGCGLNNVMMSWGHDDYMYLVAK 236
Query: 227 ENKTTLPSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLYSKSNERID 286
EN +TLPSAG FIIRYHSFYPLH G Y HLMN+EDKENLKWL VFNKYDLYSKS +D
Sbjct: 237 ENGSTLPSAGQFIIRYHSFYPLHTAGEYTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVD 296
Query: 287 VEKVKPYYMSLIEKYFPAKLRW 308
VEKVKPYYMSLI+KYFP LRW
Sbjct: 297 VEKVKPYYMSLIKKYFPENLRW 318
>AT2G19800.1 | chr2:8531106-8533354 REVERSE LENGTH=318
Length = 317
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/320 (69%), Positives = 254/320 (79%), Gaps = 15/320 (4%)
Query: 1 MTITIEQPHLDAIADRKVAGGGGGDNAAELVLDGGFVVP-----------DSNAFGNAFR 49
MTI +E D+ D K + ELVLDGGFVVP D N G++FR
Sbjct: 1 MTILVEHFVPDSRVDEKKVIE---ERDNELVLDGGFVVPKSKETDAFDAPDMNFLGHSFR 57
Query: 50 NYE-AESERKETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEFIDDS 108
+YE ESER++ VEEFYR+ HI+QTYDFV++MR+EYG+++K EM IWEC ELLN +D+S
Sbjct: 58 DYENGESERQQGVEEFYRMQHIHQTYDFVKKMRKEYGKLNKMEMSIWECCELLNNVVDES 117
Query: 109 DPDLDMPQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTF 168
DPDLD PQI+HLLQTAEAIR+D+PDEDWLHLT LIHDLGKVLL P FG LPQW+VVGDTF
Sbjct: 118 DPDLDEPQIQHLLQTAEAIRRDYPDEDWLHLTALIHDLGKVLLLPEFGGLPQWAVVGDTF 177
Query: 169 PVGCAFDECNVHFKYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKEN 228
PVGC FD N+H KYFK N D NPK NTK G Y+EGCGLDNVLMSWGHDDYMYLVAK+N
Sbjct: 178 PVGCTFDSANIHHKYFKGNHDINNPKYNTKNGVYTEGCGLDNVLMSWGHDDYMYLVAKKN 237
Query: 229 KTTLPSAGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLYSKSNERIDVE 288
TTLP AGLFIIRYHSFYPLHK GAY HLMNDED+++LKWL VFNKYDLYSKS +DVE
Sbjct: 238 GTTLPHAGLFIIRYHSFYPLHKAGAYTHLMNDEDRDDLKWLHVFNKYDLYSKSKVLVDVE 297
Query: 289 KVKPYYMSLIEKYFPAKLRW 308
+VKPYY+SLI KYFPAKL+W
Sbjct: 298 QVKPYYISLINKYFPAKLKW 317
>AT5G56640.1 | chr5:22927534-22929638 REVERSE LENGTH=315
Length = 314
Score = 439 bits (1130), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/314 (67%), Positives = 243/314 (77%), Gaps = 6/314 (1%)
Query: 1 MTITIEQP---HLDAIADRKVAGGGGGDNAAELVL--DGGFVVPDSNAFGNAFRNY-EAE 54
M I++E P H D+ + D + D F+ P+ NAFG FR+Y +
Sbjct: 1 MNISVENPVFVHEDSTTQKTGELRLDSDIPMSKISSDDEVFLAPEMNAFGRQFRDYTDTN 60
Query: 55 SERKETVEEFYRVNHINQTYDFVRRMREEYGRVDKTEMGIWECIELLNEFIDDSDPDLDM 114
SER+++VE FY H NQT DFV++MR EYG++DK M IWEC EL E +D+SDPDLD
Sbjct: 61 SERQKSVEHFYATQHTNQTLDFVQKMRSEYGKLDKMVMNIWECCELSKEVVDESDPDLDE 120
Query: 115 PQIEHLLQTAEAIRKDFPDEDWLHLTGLIHDLGKVLLHPSFGELPQWSVVGDTFPVGCAF 174
PQI+HLLQ+AEAIRKD+P+EDWLHLT LIHDLGKVL P FG LPQW+VVGDTFPVGCAF
Sbjct: 121 PQIQHLLQSAEAIRKDYPNEDWLHLTALIHDLGKVLTLPQFGGLPQWAVVGDTFPVGCAF 180
Query: 175 DECNVHFKYFKENPDYLNPKLNTKFGAYSEGCGLDNVLMSWGHDDYMYLVAKENKTTLPS 234
DE NVH KYF ENPD+ NPK NTK G YSEGCGL+NVLMSWGHDDYMYLVAKEN +TLPS
Sbjct: 181 DESNVHHKYFMENPDFNNPKYNTKAGIYSEGCGLENVLMSWGHDDYMYLVAKENGSTLPS 240
Query: 235 AGLFIIRYHSFYPLHKHGAYMHLMNDEDKENLKWLRVFNKYDLYSKSNERIDVEKVKPYY 294
GLFIIRYHSFYPLHK GAY HLMN+EDKENLKWL VFNKYDLYSKS ++VEKVKPYY
Sbjct: 241 PGLFIIRYHSFYPLHKAGAYTHLMNEEDKENLKWLHVFNKYDLYSKSKVHVNVEKVKPYY 300
Query: 295 MSLIEKYFPAKLRW 308
MSLI+KYFP LRW
Sbjct: 301 MSLIKKYFPENLRW 314
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,821,638
Number of extensions: 370855
Number of successful extensions: 880
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 876
Number of HSP's successfully gapped: 4
Length of query: 308
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 210
Effective length of database: 8,419,801
Effective search space: 1768158210
Effective search space used: 1768158210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)