BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0560400 Os06g0560400|AK108074
(216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17486.1 | chr4:9749992-9751201 REVERSE LENGTH=225 216 6e-57
AT5G47310.1 | chr5:19201325-19202674 FORWARD LENGTH=246 215 1e-56
AT1G47740.1 | chr1:17567903-17569035 FORWARD LENGTH=280 204 2e-53
AT5G25170.1 | chr5:8693257-8694438 FORWARD LENGTH=219 196 9e-51
AT1G80690.1 | chr1:30329283-30330524 REVERSE LENGTH=228 190 6e-49
AT2G25190.1 | chr2:10734187-10735426 FORWARD LENGTH=241 187 4e-48
AT4G31980.1 | chr4:15464905-15469204 FORWARD LENGTH=681 179 7e-46
AT4G25660.1 | chr4:13083677-13084989 FORWARD LENGTH=256 86 2e-17
AT4G25680.1 | chr4:13088425-13089952 FORWARD LENGTH=253 85 2e-17
AT3G07090.1 | chr3:2243153-2244476 REVERSE LENGTH=266 54 5e-08
>AT4G17486.1 | chr4:9749992-9751201 REVERSE LENGTH=225
Length = 224
Score = 216 bits (551), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 137/177 (77%), Gaps = 4/177 (2%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+NNYL+W G+GIFHS +E H EY +GAH++PTSGV+EVEP+ CPGF++R
Sbjct: 28 VYLNVYDLTPVNNYLYWFGIGIFHSGIEAHNLEYCYGAHEYPTSGVYEVEPRNCPGFIFR 87
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
S+ +G TS++ +FR ++++++ +YHGDTYHLI+KNCNHFT+++ +LTGKPIPGW+NR
Sbjct: 88 RSVLLGTTSMSRSDFRSYMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINR 147
Query: 147 PAKLGAFCNCLLPESMRLESTGTKHLAD-CHFSD-DSRTSSNEHFEDEDLEDKHLLS 201
A++G+FCNCLLPES++L T L + FSD D S DE+ ++HL++
Sbjct: 148 LARVGSFCNCLLPESIQL--TAVSALPERLEFSDEDESNSEASSVSDEEGSEQHLIN 202
>AT5G47310.1 | chr5:19201325-19202674 FORWARD LENGTH=246
Length = 245
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 127/155 (81%), Gaps = 2/155 (1%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+NNYL+W GLGIFHS +E HG EY +GAH++ +SGVFEVEP+ CPGF++R
Sbjct: 30 VYLNVYDLTPVNNYLYWFGLGIFHSGIEAHGFEYGYGAHEYSSSGVFEVEPRSCPGFIFR 89
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
S+ +G TS++ +FR F+++++ +YHGDTYHLI+KNCNHFT+++ ++TGKPIPGW+NR
Sbjct: 90 RSVLLGTTSMSRSDFRSFMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQVTGKPIPGWINR 149
Query: 147 PAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDS 181
A++G+FCNC+LPES++L S H FSDD+
Sbjct: 150 MARVGSFCNCILPESIQLSS--VNHPEALEFSDDN 182
>AT1G47740.1 | chr1:17567903-17569035 FORWARD LENGTH=280
Length = 279
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 88/141 (62%), Positives = 114/141 (80%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+N Y++W GLGIFHS VEVHG EY+FGAHD+ TSGVFEVEP+ CPGF ++
Sbjct: 71 VYLNVYDLTPINGYIYWAGLGIFHSGVEVHGVEYAFGAHDYATSGVFEVEPRQCPGFKFK 130
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
SIFIG T+LNP + R+F++ MA Y+G+ YHLI KNCNHF D+ +LTGK IP WVNR
Sbjct: 131 KSIFIGTTNLNPTQVREFMEDMACSYYGNMYHLIVKNCNHFCQDVCYKLTGKKIPKWVNR 190
Query: 147 PAKLGAFCNCLLPESMRLEST 167
A++G+ C+C+LPES+++ +
Sbjct: 191 LAQIGSVCSCILPESLKITAV 211
>AT5G25170.1 | chr5:8693257-8694438 FORWARD LENGTH=219
Length = 218
Score = 196 bits (497), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 106/136 (77%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+N Y +W GLGI+HS VEVHG EY FGAHDH T+G+FEVEPK CPGF +R
Sbjct: 20 VYLNVYDLTPINGYAYWLGLGIYHSGVEVHGVEYGFGAHDHSTTGIFEVEPKQCPGFTFR 79
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
SI IGRT L+P R F++++A EY G++YHLI+KNCNHF +D+ +LT + IP WVNR
Sbjct: 80 KSILIGRTDLDPENVRVFMEKLAEEYSGNSYHLITKNCNHFCNDVCVQLTRRSIPSWVNR 139
Query: 147 PAKLGAFCNCLLPESM 162
A+ G FCNC+LP +
Sbjct: 140 LARFGLFCNCVLPAEL 155
>AT1G80690.1 | chr1:30329283-30330524 REVERSE LENGTH=228
Length = 227
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 122/185 (65%), Gaps = 12/185 (6%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+N Y +W GLG++HS VEVHG EY++GAH++P++G+FE EPK C GF +R
Sbjct: 17 VYLNVYDLTPINGYAYWLGLGVYHSGVEVHGIEYAYGAHEYPSTGIFEGEPKQCEGFTFR 76
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
SI IG+T L PLE R ++++A Y G +Y+LI+KNCNHF D+ +LTG PIP WVNR
Sbjct: 77 KSILIGKTDLGPLEVRATMEQLADNYKGSSYNLITKNCNHFCDETCIKLTGNPIPSWVNR 136
Query: 147 PAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDSRTSSNEHFEDEDLEDKHLLSQSSVS 206
A++G CNC+LP ++ G ++R + ++ E E+ E K L S SS
Sbjct: 137 LARIGFMCNCVLPATINATRFG-----------NNRVNQDKSCEAEN-EKKKLTSVSSRE 184
Query: 207 EDAIV 211
I
Sbjct: 185 RSTIA 189
>AT2G25190.1 | chr2:10734187-10735426 FORWARD LENGTH=241
Length = 240
Score = 187 bits (474), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+N Y +W GLG+FHS VEVHG EY+FGAH+ ++G+FEVEPK CPGF +R
Sbjct: 19 VYLNVYDLTPMNAYGYWLGLGVFHSGVEVHGVEYAFGAHESSSTGIFEVEPKKCPGFTFR 78
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
SI +G+T L E R F++++A EY G+ YHLI++NCNHF +++ +L K IP WVNR
Sbjct: 79 KSILVGKTDLVAKEVRVFMEKLAEEYQGNKYHLITRNCNHFCNEVCLKLAQKSIPRWVNR 138
Query: 147 PAKLGAFCNCLLPESMRLESTGTKHLADCHFSDDSRTS 184
A+LG CNC+LP RL + + S+ +
Sbjct: 139 LARLGVLCNCVLPP--RLNEAKVRRVGKGELSESEKKK 174
>AT4G31980.1 | chr4:15464905-15469204 FORWARD LENGTH=681
Length = 680
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 102/136 (75%)
Query: 27 VVLNVYDLTPLNNYLHWCGLGIFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCCPGFMYR 86
V LNVYDLTP+N Y +W G+GI+HS +EVHG EY +GAH+ +SG+FEVEPK CPGF +R
Sbjct: 19 VYLNVYDLTPMNVYGYWLGIGIYHSGLEVHGVEYGYGAHEKSSSGIFEVEPKKCPGFTFR 78
Query: 87 CSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPIPGWVNR 146
SI +G T + E R F+++++ EY G+ YHLI++NCNHF + +S +LT K IP WVNR
Sbjct: 79 KSILVGETEMKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKSIPSWVNR 138
Query: 147 PAKLGAFCNCLLPESM 162
A+LG CNC+LP +
Sbjct: 139 LARLGFLCNCVLPACL 154
>AT4G25660.1 | chr4:13083677-13084989 FORWARD LENGTH=256
Length = 255
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 27 VVLNVYDLT-----PLNN--------YLHWCGLG-IFHSAVEVHGS-EYSFGAHDHPTSG 71
VVL++YD+T NN + GLG IFHSA++V+G+ E+S+G + T G
Sbjct: 4 VVLHIYDVTNSGSEKTNNTIVQINRFFKDGIGLGGIFHSAIQVYGNDEWSYGYCEQGT-G 62
Query: 72 VFEVEPKCCPGFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDL 131
VF P + YR I +G+T ++ ++ E+ G TY L+SKNCNHF D L
Sbjct: 63 VFSCPSGKNPMYTYREKIVLGKTDCTIFMVNQILRELSREWPGHTYDLLSKNCNHFCDVL 122
Query: 132 STRLTGKPIPGWVNRPAKLG 151
RL IPGWVNR A G
Sbjct: 123 CDRLGVPKIPGWVNRFAHAG 142
>AT4G25680.1 | chr4:13088425-13089952 FORWARD LENGTH=253
Length = 252
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 76/140 (54%), Gaps = 16/140 (11%)
Query: 27 VVLNVYDLT-----PLNN--------YLHWCGLG-IFHSAVEVHGS-EYSFGAHDHPTSG 71
VVL++YD+T NN + GLG IFHSA++V+G+ E+S+G + T G
Sbjct: 4 VVLHIYDVTNSGSEKTNNTIVQINRFFKDGIGLGGIFHSAIQVYGNDEWSYGYCELGT-G 62
Query: 72 VFEVEPKCCPGFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDL 131
VF P + YR I +G+T ++ ++ E+ G TY L+SKNCNHF D L
Sbjct: 63 VFSCPSGKNPMYTYREKIVLGKTDCTIFMVNQMLRELSREWPGHTYDLLSKNCNHFCDVL 122
Query: 132 STRLTGKPIPGWVNRPAKLG 151
RL IPGWVNR A G
Sbjct: 123 CDRLGVPKIPGWVNRFANAG 142
>AT3G07090.1 | chr3:2243153-2244476 REVERSE LENGTH=266
Length = 265
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 12/124 (9%)
Query: 27 VVLNVYDLTP-LNNYLHWCGLG-----IFHSAVEVHGSEYSFGAHDHPTSGVFEVEPKCC 80
V LNVYDL+ L L LG ++H+ + V+G+EY FG G+ +
Sbjct: 8 VTLNVYDLSQGLARQLSQSLLGKVIEGVWHTGIVVYGNEYFFGG------GIQHLPVGRT 61
Query: 81 PGFMYRCSIFIGRTSLNPLEFRDFIQRMASEYHGDTYHLISKNCNHFTDDLSTRLTGKPI 140
P +I +G + + F +++ ++ Y ++Y+L++ NCN+F+++++ L GK I
Sbjct: 62 PYGTPIRTIELGLSHVPKDVFEMYLEEISPRYTAESYNLLTHNCNNFSNEVAQFLVGKGI 121
Query: 141 PGWV 144
P ++
Sbjct: 122 PDYI 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,629,619
Number of extensions: 200008
Number of successful extensions: 503
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 501
Number of HSP's successfully gapped: 10
Length of query: 216
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 122
Effective length of database: 8,529,465
Effective search space: 1040594730
Effective search space used: 1040594730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)