BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0560000 Os06g0560000|AK063490
(484 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G03570.1 | chr5:904514-906593 FORWARD LENGTH=513 441 e-124
AT2G38460.1 | chr2:16103603-16105930 FORWARD LENGTH=525 433 e-121
AT5G26820.1 | chr5:9433858-9437005 FORWARD LENGTH=599 94 2e-19
>AT5G03570.1 | chr5:904514-906593 FORWARD LENGTH=513
Length = 512
Score = 441 bits (1134), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/480 (49%), Positives = 300/480 (62%), Gaps = 26/480 (5%)
Query: 27 LYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDRXX 86
LY+G+FLARWGAR WEFSV LYMI +WP SL LTA+YGVVE+ + GPIVG ++D
Sbjct: 37 LYLGYFLARWGARTWEFSVALYMIYLWPNSLFLTAMYGVVESGSATLFGPIVGQMIDGMS 96
Query: 87 XXXXXXXXXXXQGASFVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVXXXXXXXXXX 146
Q SF+ AG +V ALLV L + FP F LVV+TN+
Sbjct: 97 YVKVLRLWLVTQNLSFIVAGGAVVALLVV-PDLKSQNFPVFATLVVLTNLSGAIGVLSTL 155
Query: 147 XXXXXXEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSMEXXXXX 206
ER+WVVV++ G AVLT +NSVIR IDLS KLL+PV++G ISFVS+
Sbjct: 156 AGTVLIERDWVVVMSEGHSPAVLTRMNSVIRGIDLSSKLLSPVITGLIISFVSLRASAIT 215
Query: 207 XXXXXXXXXXXQYWLFVSVYAGFPALSETSQ-----------------ISXXXXXXXXXX 249
+YWLF+SVY G PA+ ++ + S
Sbjct: 216 FAAWATITVWIEYWLFISVYNGVPAIVQSDERRSLRSSQSQAEETDSASSFYVPLLHEEE 275
Query: 250 XXXQPQKVERLWMTMLPCWES-----WAVYARQEVVLPGVALAFLYFTVLSFGTLMTATL 304
Q R+ + ES W Y QE+VLPGV+LA L+FTVLSFGTLMTATL
Sbjct: 276 SYRNTQSRSRILRILERISESSFVSAWRNYLNQEIVLPGVSLALLFFTVLSFGTLMTATL 335
Query: 305 DWEGIPAYVISLARGVSAAVGIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVW 364
+W+GIP Y+I + RG+SA VG+AAT +YP +R+S LR G+WS W+QW CLLVCV S+W
Sbjct: 336 EWKGIPTYIIGIGRGISAGVGLAATVLYPLMQSRISPLRTGVWSFWSQWTCLLVCVGSIW 395
Query: 365 AGGAAPLASAWMLMGGVAASRLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDL 424
+++MLM GVAASRLGLWMFDLAV+Q MQD VPESDRCVVGGVQNSLQS DL
Sbjct: 396 VEKEK--IASYMLMAGVAASRLGLWMFDLAVIQQMQDLVPESDRCVVGGVQNSLQSALDL 453
Query: 425 LTYVMGIIVSDPRDFGELIVLSFFLVTCAAAMYTMHVYRVRKHLFHLDRILPKMNWIKAS 484
+ ++GIIVS+P+DF L ++SF V+ A +YT+H+YR+RKHLFHL++I P +N AS
Sbjct: 454 MANLLGIIVSNPKDFWMLTLISFATVSLAGILYTIHLYRIRKHLFHLEKI-PLLNNFFAS 512
>AT2G38460.1 | chr2:16103603-16105930 FORWARD LENGTH=525
Length = 524
Score = 433 bits (1114), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/480 (48%), Positives = 298/480 (62%), Gaps = 36/480 (7%)
Query: 27 LYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDRXX 86
LYVG+FLARW AR WEFSV LYMI +WP SLLL A+YG +E+ + A GPIVG V+
Sbjct: 41 LYVGYFLARWSARTWEFSVALYMIHLWPNSLLLAAIYGAIESGSTAIFGPIVGQWVEGMD 100
Query: 87 XXXXXXXXXXXQGASFVAAGVSVTALLVYGARLAAAGFPAFVALVVVTNVXXXXXXXXXX 146
Q S+ AG +V LL+ + L + P F L+V+TN+
Sbjct: 101 YVKVLRLWLLFQNLSYTIAGGAVIKLLLV-SDLKSRNLPVFAILIVLTNLAGAIGVLSTL 159
Query: 147 XXXXXXEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISFVSMEXXXXX 206
ER+W VV++ G P AVLT +NSVIR IDLS KLL+PV++G ISFVS++
Sbjct: 160 AGTILIERDWAVVMSEGHPPAVLTKMNSVIRGIDLSSKLLSPVITGLIISFVSLKASAIT 219
Query: 207 XXXXXXXXXXXQYWLFVSVYAGFPALSETSQISXXXXXXXXXXXXXQPQKVERLWMTMLP 266
+YWLF+SVY+G PA++ +++ P V +++P
Sbjct: 220 FAAWATITAWVEYWLFISVYSGVPAITRSNERRILRSRTKQVEGRDAPVSV-----SIVP 274
Query: 267 CWE---------------------------SWAVYARQEVVLPGVALAFLYFTVLSFGTL 299
E +W +Y QEVVLPGV+LA L+FTVLSFGTL
Sbjct: 275 GTEEGYTGNPPSRTGILVILDRMSKSSFVGAWRIYFNQEVVLPGVSLALLFFTVLSFGTL 334
Query: 300 MTATLDWEGIPAYVISLARGVSAAVGIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVC 359
MTATL WEGIP Y+I + RG+SA VG+AAT VYP +R+STLR GLWS W+QW CLLVC
Sbjct: 335 MTATLQWEGIPTYIIGIGRGISATVGLAATLVYPLMQSRLSTLRTGLWSFWSQWSCLLVC 394
Query: 360 VASVWAGGAAPLASAWMLMGGVAASRLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQ 419
V S+W +++MLM GVAASRLGLWMFDLAV+Q MQD V ESDRCVVGGVQNSLQ
Sbjct: 395 VGSIWVKKDK--IASYMLMAGVAASRLGLWMFDLAVIQQMQDLVSESDRCVVGGVQNSLQ 452
Query: 420 SMFDLLTYVMGIIVSDPRDFGELIVLSFFLVTCAAAMYTMHVYRVRKHLFHLDRILPKMN 479
S DL+ Y++GIIVS+P+DF L ++SF V+ A +YT+H+YR+R H+FHL++I P +N
Sbjct: 453 SALDLMAYLLGIIVSNPKDFWILTLISFSTVSLAGMLYTIHLYRIRNHIFHLEKI-PLLN 511
>AT5G26820.1 | chr5:9433858-9437005 FORWARD LENGTH=599
Length = 598
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 115/455 (25%), Positives = 187/455 (41%), Gaps = 21/455 (4%)
Query: 27 LYVGHFLARWGARMWEFSVGLYMIRIWPGSLLLTAVYGVVEASAVAALGPIVGAVVDRXX 86
LY + ++W F+ + ++P SLL AV G V A+ A GP+VG +D
Sbjct: 152 LYASCLVGNLVEQLWNFAWPSAIAMLYP-SLLPVAVMGFVTKLAIIAGGPVVGKFMDYSP 210
Query: 87 XXXXXXXXXXXQGASFV-AAGVSVTALLVYGARLAAAGF-PAFVALVVVTNVXXXXXXXX 144
Q A+ V +AG+ + A V ++ P F AL+ +
Sbjct: 211 RVPTYISLNVIQAAAQVLSAGMIIHAYTVPSTSASSILLQPWFFALLFAGAIDSLCGIAS 270
Query: 145 XXXXXXXXEREWVVVIAGGQPAAVLTGINSVIRRIDLSCKLLAPVLSGFFISF---VSME 201
ER+WVV++AG L N+V+ RIDL C++ +L G +S V+
Sbjct: 271 GVAI----ERDWVVLLAGINRPIALAQANAVLHRIDLLCEIAGTMLFGILLSKYDPVTCL 326
Query: 202 XXXXXXXXXXXXXXXXQYWLFVSVYAGFPALSETSQISXXXXXXXXXXXXXQPQKVERLW 261
WL +G + S S +E +
Sbjct: 327 KFAATLMVGSLPTMTALIWLTNKFSSGVLDRPKCSLNSCSAEGSRTNTDSIFDIGMETIK 386
Query: 262 MTMLPCWESWAVYARQEVVLPGVALAFLYFT-VLSFGTLMTATLDWEGIPAYVISLARGV 320
+ W Y +Q V+ +A LYF VL+ G+LMTA L + VI G+
Sbjct: 387 L-------GWKEYIQQPVLPASLAYVLLYFNIVLTPGSLMTAFLTQRCVNPSVIGGFSGL 439
Query: 321 SAAVGIAATWVYPAAHARVSTLRAGLWSIWAQWCCLLVCVASVWAGGAAPLASAWMLMGG 380
A +G+AAT++ RV L+AG ++ Q L V VA + + + + +
Sbjct: 440 CAVMGVAATFLSANLVKRVGILKAGAVGLFFQASLLAVAVAVYCSSSLSHKSPLFFFLSM 499
Query: 381 VAASRLGLWMFDLAVMQLMQDGVPESDRCVVGGVQNSLQSMFDLLTYVMGIIVSDPRDFG 440
+ SRLG + + Q++Q G+P S ++G + S+ S+ + L + I +D FG
Sbjct: 500 IVLSRLGHMSYGVVGAQILQTGIPSSKANLIGATEISVASLAESLMLGVAIAANDASHFG 559
Query: 441 ELIVLSFFLVTCAAAMYT---MHVYRVRKHLFHLD 472
L VLS V A+ ++ + ++ LF D
Sbjct: 560 FLAVLSLLSVVAASLIFCRLLRNPTDEQRRLFSFD 594
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.137 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,074,743
Number of extensions: 268250
Number of successful extensions: 665
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 6
Length of query: 484
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 382
Effective length of database: 8,310,137
Effective search space: 3174472334
Effective search space used: 3174472334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 114 (48.5 bits)