BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0559400 Os06g0559400|AK068350
         (230 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03170.1  | chr3:732066-732729 FORWARD LENGTH=157               49   2e-06
AT4G26288.1  | chr4:13307623-13308217 FORWARD LENGTH=156           47   8e-06

>AT3G03170.1 | chr3:732066-732729 FORWARD LENGTH=157
          Length = 156

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query: 127 GLSKYYQGKSQSFTSLCNARCVQDLAKKTTPYITRMK 163
           GLSK+Y+GKSQSFT+L  A  V+DLAK   P+  ++K
Sbjct: 58  GLSKHYKGKSQSFTTLAEALTVEDLAKPENPFNAKLK 94



>AT4G26288.1 | chr4:13307623-13308217 FORWARD LENGTH=156
          Length = 155

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 47/89 (52%), Gaps = 17/89 (19%)

Query: 127 GLSKYYQGKSQSFTSLCNARCVQDLAKKTTPYITRMKLQLRRGHGVVDRLSNSRRAPGPC 186
           GLSKYY+GKSQSFTSL N   +QDL K+     +R K   +R +             GP 
Sbjct: 79  GLSKYYKGKSQSFTSLANVTSLQDLVKRG----SRTKSCCKRDYFY-----------GPK 123

Query: 187 SKTMAKKATRCSSDRLLSRAREHKPLHSS 215
           + T++ KATR SS    SR    KP H S
Sbjct: 124 A-TISMKATRTSSKHSNSRL-TFKPFHDS 150



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.126    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,514,227
Number of extensions: 118439
Number of successful extensions: 442
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 443
Number of HSP's successfully gapped: 3
Length of query: 230
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 135
Effective length of database: 8,502,049
Effective search space: 1147776615
Effective search space used: 1147776615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)