BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0554300 Os06g0554300|AK070137
         (422 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22795.1  | chr2:9697380-9699584 REVERSE LENGTH=735             70   2e-12
AT4G37820.1  | chr4:17785692-17787290 FORWARD LENGTH=533           65   6e-11
AT4G33740.1  | chr4:16187384-16188802 FORWARD LENGTH=473           60   2e-09

>AT2G22795.1 | chr2:9697380-9699584 REVERSE LENGTH=735
          Length = 734

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 44/67 (65%)

Query: 1  MLHHSNSRHQRNRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEYLEDAENQLAHDDR 60
          M   S  R QR++G +VK  +Q TLLL V +WL+YQVKHS++KK ++ E A+  +   D+
Sbjct: 1  MFRSSPRRGQRSKGFKVKHCIQLTLLLSVGIWLLYQVKHSHEKKAQFEESAKIVVGGVDK 60

Query: 61 SMFQGRK 67
           +  GRK
Sbjct: 61 VVKLGRK 67



>AT4G37820.1 | chr4:17785692-17787290 FORWARD LENGTH=533
          Length = 532

 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 7/68 (10%)

Query: 8  RHQRNRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEY-------LEDAENQLAHDDR 60
          R QR++G +VK  +Q TLLLGV +WL+YQ+KHS++KK E+       ++D +N + +  R
Sbjct: 7  RGQRSKGIKVKHCIQLTLLLGVGIWLIYQMKHSHEKKAEFEGTSKIVVDDIDNTVVNLGR 66

Query: 61 SMFQGRKE 68
             + R E
Sbjct: 67 KDLRPRIE 74



>AT4G33740.1 | chr4:16187384-16188802 FORWARD LENGTH=473
          Length = 472

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 37/49 (75%), Gaps = 1/49 (2%)

Query: 2  LHHSNSRHQR-NRGSRVKTLLQATLLLGVVVWLMYQVKHSYDKKNEYLE 49
          +  +++R QR ++G + K +LQ  +LLGV +WL+YQVK+S+DKK E+ E
Sbjct: 1  MKKTSTRSQRGSKGIKGKHVLQICVLLGVCIWLIYQVKYSHDKKKEFYE 49



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.295    0.117    0.309 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,819,013
Number of extensions: 392401
Number of successful extensions: 2474
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2453
Number of HSP's successfully gapped: 10
Length of query: 422
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 321
Effective length of database: 8,337,553
Effective search space: 2676354513
Effective search space used: 2676354513
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.8 bits)
S2: 113 (48.1 bits)