BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0542200 Os06g0542200|AK058589
         (342 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15710.1  | chr1:5404505-5405581 FORWARD LENGTH=359            354   4e-98
AT5G34930.1  | chr5:13233391-13235522 FORWARD LENGTH=641          345   3e-95

>AT1G15710.1 | chr1:5404505-5405581 FORWARD LENGTH=359
          Length = 358

 Score =  354 bits (908), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 160/262 (61%), Positives = 203/262 (77%)

Query: 74  LRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFATADELCEAGPDVL 133
           L++ ++GFGNFGQF++  + R GH ++  SRSDYS      G RFF    +LCE  PDV+
Sbjct: 59  LKIAVLGFGNFGQFLSKTLIRHGHDLITHSRSDYSDAANSIGARFFDNPHDLCEQHPDVV 118

Query: 134 LVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPPGFGIVCTHPMFGP 193
           L+C+SILSTE+V+R+ PF++LR  TL  DVLSVK+FP+ L ++ LP  F I+CTHPMFGP
Sbjct: 119 LLCTSILSTESVLRSFPFQRLRRSTLFVDVLSVKEFPKALFIKYLPKEFDILCTHPMFGP 178

Query: 194 ESGKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEMLCEEHDRYAAGSQF 253
           ESGKH WSGLPFVYDKVR+     +  +CE+FL IFE EGC+MVEM CE+HD YAAGSQF
Sbjct: 179 ESGKHSWSGLPFVYDKVRIGDAASRQERCEKFLRIFENEGCKMVEMSCEKHDYYAAGSQF 238

Query: 254 ITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFMYNVNATEQIDNLD 313
           +THT+GR+L +  +ES+PINTKGYETLL L +NT SDSF+L+YGLFMYN NA EQ++ LD
Sbjct: 239 VTHTMGRVLEKYGVESSPINTKGYETLLDLVENTSSDSFELFYGLFMYNPNALEQLERLD 298

Query: 314 RAFEKVKQMLYGRLHNVLRKQI 335
            AFE VK+ L+GRLH   RKQ+
Sbjct: 299 MAFESVKKELFGRLHQQYRKQM 320



>AT5G34930.1 | chr5:13233391-13235522 FORWARD LENGTH=641
          Length = 640

 Score =  345 bits (884), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 202/256 (78%)

Query: 74  LRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFATADELCEAGPDVL 133
           L++GIVGFGNFGQF+   + +QGH VLA SRSDY+   A+ G+ +F+  D+L E  P+V+
Sbjct: 365 LKIGIVGFGNFGQFLGKTMVKQGHTVLAYSRSDYTDEAAKLGVSYFSDLDDLFEEHPEVI 424

Query: 134 LVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPPGFGIVCTHPMFGP 193
           ++C+SILSTE V+ ++PF++L+  TL  DVLSVK+FPRNL L+ LP  F I+CTHPMFGP
Sbjct: 425 ILCTSILSTEKVLESLPFQRLKRSTLFVDVLSVKEFPRNLFLQTLPQDFDILCTHPMFGP 484

Query: 194 ESGKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEMLCEEHDRYAAGSQF 253
           ESGK+GW+ L FV+DKVR+  +  + ++C  FL IF REGCRMVEM C EHD +AAGSQF
Sbjct: 485 ESGKNGWNNLAFVFDKVRIGMDDRRKSRCNSFLDIFAREGCRMVEMSCAEHDWHAAGSQF 544

Query: 254 ITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFMYNVNATEQIDNLD 313
           ITHT+GR+L +L+LESTPI+TKGYETLL+L +NT  DSFDLYYGLF+YN NA EQ++   
Sbjct: 545 ITHTVGRLLEKLSLESTPIDTKGYETLLKLVENTAGDSFDLYYGLFLYNPNAMEQLERFH 604

Query: 314 RAFEKVKQMLYGRLHN 329
            AFE +K  L+GRLH+
Sbjct: 605 VAFESLKTQLFGRLHS 620




 Score =  318 bits (814), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 148/263 (56%), Positives = 193/263 (73%), Gaps = 2/263 (0%)

Query: 74  LRVGIVGFGNFGQFIAGGIQRQGHAVLATSRSDYSGYCARHGIRFFATADELCEAGPDVL 133
           LR+ I+GFGN+GQF+A  +  QGH + A SRSD+S    R G+ +F    +LCE  PDV+
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAHSRSDHSSAARRLGVSYFTDLHDLCERHPDVV 112

Query: 134 LVCSSILSTEAVVRAIPFRKLRPGTLVADVLSVKQFPRNLLLEILPPGFGIVCTHPMFGP 193
           L+C+SILS E +++ +PF++LR  TL  DVLSVK+F + LLL+ LP  F I+CTHPMFGP
Sbjct: 113 LLCTSILSIENILKTLPFQRLRRNTLFVDVLSVKEFAKTLLLQYLPEDFDILCTHPMFGP 172

Query: 194 ES--GKHGWSGLPFVYDKVRVAKEGDQAAKCEQFLSIFEREGCRMVEMLCEEHDRYAAGS 251
           +S    HGW GL FVYDKVR+ +E  + ++CE FL IF REGC MVEM   +HD++AA S
Sbjct: 173 QSVSSNHGWRGLRFVYDKVRIGEERLRVSRCESFLEIFVREGCEMVEMSVTDHDKFAAES 232

Query: 252 QFITHTIGRILSQLNLESTPINTKGYETLLQLTKNTISDSFDLYYGLFMYNVNATEQIDN 311
           QFITHT+GR+L  L L STPINTKGYE LL L +N   DSFDLYYGLF+YN N+ E ++ 
Sbjct: 233 QFITHTLGRLLGMLKLISTPINTKGYEALLDLAENICGDSFDLYYGLFVYNNNSLEVLER 292

Query: 312 LDRAFEKVKQMLYGRLHNVLRKQ 334
           +D AFE +++ L+ RLH V+RKQ
Sbjct: 293 IDLAFEALRKELFSRLHGVVRKQ 315



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,457,806
Number of extensions: 237720
Number of successful extensions: 766
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 3
Length of query: 342
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 243
Effective length of database: 8,392,385
Effective search space: 2039349555
Effective search space used: 2039349555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 112 (47.8 bits)