BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0523300 Os06g0523300|AK105345
(98 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G41761.1 | chr5:16711437-16711742 FORWARD LENGTH=102 88 1e-18
AT3G55570.1 | chr3:20610166-20610671 REVERSE LENGTH=110 74 1e-14
AT3G09950.1 | chr3:3060354-3060632 REVERSE LENGTH=93 72 6e-14
AT5G55620.1 | chr5:22530373-22530678 FORWARD LENGTH=102 66 3e-12
AT3G11405.1 | chr3:3580895-3581359 FORWARD LENGTH=155 62 5e-11
AT5G06010.1 | chr5:1809940-1810263 FORWARD LENGTH=108 52 8e-08
>AT5G41761.1 | chr5:16711437-16711742 FORWARD LENGTH=102
Length = 101
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 22 QQPSTERKETSSAFXX---XXXXXXFQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVD 78
Q +R ET++ FQ+PLHYP+Y K+DYE MPEW++D LLREYGLPV
Sbjct: 20 QDGEDQRNETATKINHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVI 79
Query: 79 GGVEEKRRFAMGAFLW 94
G EKR+FA+GAFLW
Sbjct: 80 GDSYEKRKFAIGAFLW 95
>AT3G55570.1 | chr3:20610166-20610671 REVERSE LENGTH=110
Length = 109
Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLW 94
F+MPLHYPRY K DY+ MPEW++D +L +YGL G + KR FA+GAFLW
Sbjct: 32 FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82
>AT3G09950.1 | chr3:3060354-3060632 REVERSE LENGTH=93
Length = 92
Score = 72.0 bits (175), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPV--DGGVEEKRRFAMGAFLWPDQ 97
F+MPLHYPRY K DYE M EWR+D LL EYGL D + EKR FA+ F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWPHH 91
>AT5G55620.1 | chr5:22530373-22530678 FORWARD LENGTH=102
Length = 101
Score = 66.2 bits (160), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLWPDQ 97
FQ+PLHYP+Y K+DYE M + R+D LL++YG +G +E+KR FA+ +FLWPDQ
Sbjct: 47 FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100
>AT3G11405.1 | chr3:3580895-3581359 FORWARD LENGTH=155
Length = 154
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVD-GGVEEKRRFAMGAFLW 94
FQMPL YP Y K Y+ M E +D LL+ YGLP D G + K+ FA+GAFLW
Sbjct: 57 FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108
>AT5G06010.1 | chr5:1809940-1810263 FORWARD LENGTH=108
Length = 107
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 45 QMPLHYPRYKKADYEAMPEWRVDCLLREYGL-PVDGGVEEKRRFAMGAFLW 94
+MPL YP YKK DYE M E +D LL YG+ V G + +KR+FA F W
Sbjct: 48 EMPLLYPCYKKEDYEKMSEETIDMLLATYGIMTVPGDLADKRKFAFETFRW 98
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,620,949
Number of extensions: 50892
Number of successful extensions: 77
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 6
Length of query: 98
Length of database: 11,106,569
Length adjustment: 68
Effective length of query: 30
Effective length of database: 9,242,281
Effective search space: 277268430
Effective search space used: 277268430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)