BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0505100 Os06g0505100|Os06g0505100
(2366 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67140.3 | chr1:25101016-25117372 REVERSE LENGTH=2224 1655 0.0
>AT1G67140.3 | chr1:25101016-25117372 REVERSE LENGTH=2224
Length = 2223
Score = 1655 bits (4287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/2132 (45%), Positives = 1265/2132 (59%), Gaps = 254/2132 (11%)
Query: 8 AGEPIPLSRFGALVAQLESVVASARQKPPDALLCFXXXXXXXXXXXXXPKETIQLWQRKC 67
A + +PLSRFG LVAQLES+VASA QK PD LLCF PKE++ + QRKC
Sbjct: 6 ASDNVPLSRFGVLVAQLESIVASASQKNPDPLLCFEILSDLISAIDEEPKESLLVTQRKC 65
Query: 68 EDALQSLLFLGARRPVRRLASSAMGRIIERGDAISVYSRASTLQGWLVDGKRTDPMAYAG 127
EDAL SL+ LGARRPVR LAS AM +II GD+IS+YSRAS+LQG+L DGKR+DP AG
Sbjct: 66 EDALYSLVTLGARRPVRHLASVAMAKIISNGDSISIYSRASSLQGFLSDGKRSDPQRVAG 125
Query: 128 VAQCLGEIYRLFGHKITAGLIETSNIVAKLMKYHEDFVRQDXXXXXXXXXXXXXXXXXXX 187
AQCLGE+YR FG KIT+GL ET++IV KL+K++EDFVRQ+
Sbjct: 126 AAQCLGELYRHFGKKITSGLFETTSIVTKLVKFNEDFVRQEAFILLHNALEGCGGTAAAT 185
Query: 188 XXXXXFRIIMRGGVSDKSFIVRVAAARCLKAFANIGGPGLGMAEIDTSMSCCVKGLEDNV 247
+R+I R DKSF+VR+AAARCLKAF+NIGGPGLG +E DT S CVKG+ED+
Sbjct: 186 AYSEAYRLITRFSTLDKSFVVRIAAARCLKAFSNIGGPGLGTSEFDTLASYCVKGIEDSE 245
Query: 248 SAVRDSFAEALGSLLALAVNPDAQVKKGVKKQSTSGKKFDDGLQKHLILPFVRANGANAK 307
S+VRD+FAEALGSLLAL ++P+A V+ K PF AK
Sbjct: 246 SSVRDAFAEALGSLLALGMHPEAHVQPRGKG------------------PF-----PPAK 282
Query: 308 KLRIGLALSWVF-FLQLTCSHSKLVRFYTHMHHYSYLLWVLWYLPGTITLCLFLSWSQLL 366
KL GL + F + S +K RF L LSW
Sbjct: 283 KLEGGLQRHLILPFTKAVGSRAKNTRF-----------------------GLALSWV--- 316
Query: 367 ATPVELSSAAQVHSSPTPGGDYSGYLAMIHMKYGTPDSELQNYAVQVTEILQGNASPDPH 426
+L I ++Y DSELQ+Y++ + ++L+G++S D H
Sbjct: 317 -----------------------FFLQAIRIRYLDSDSELQDYSLPIMDMLRGDSSIDAH 353
Query: 427 ALACVLYVLRVGVADQMTEPTQREFLVFLGRKLESSNYTALMRVATLRILSYLLRSLGEV 486
ALACVLY+LRVGV DQM EP+QR F VFLG++L+SSN + M++ LR LSY L++LGEV
Sbjct: 354 ALACVLYILRVGVIDQMMEPSQRSFSVFLGKQLQSSNASPSMKIVALRALSYTLKTLGEV 413
Query: 487 PSEFKDILDNTVVAALSHSSAHVIIIFGDTTKIRRHGGIGYHFSLVRVEAALTLRALAEV 546
P EFK+ D+TV AALSH LVRVEAALTLRALAEV
Sbjct: 414 PHEFKEFFDDTVGAALSH-----------------------FLDLVRVEAALTLRALAEV 450
Query: 547 DPTCVGGLVSYGITTLHALTETLSFDKGKIMNLELDSLHGQASVLAALVAISPKLLLGYP 606
DPTCVGGL S+ +TTL+AL E+LSF+KG + +L SLHGQA+ LAALV+ISP L LGYP
Sbjct: 451 DPTCVGGLTSFAVTTLNALRESLSFEKGDKLKTDLASLHGQAATLAALVSISPGLSLGYP 510
Query: 607 ARLPKSVLEVSKKMLNGFSRNPVAASAEREAGWXXXXXXXXXMPKEELEDQVFDVLLLWA 666
ARLP+SVLEVSKKML RN AS+E+EAGW MPKEE DQ FD+L+LW
Sbjct: 511 ARLPRSVLEVSKKMLTESRRNVTVASSEKEAGWLLLSSLLNSMPKEEFGDQDFDILILWT 570
Query: 667 GPFTGNPESYLRHVQDWASELRVLSVAIEALTAFIRSFVSPIMTNANGGILLNPVXXXXX 726
F GNPE ++ + S L V S AI+ALTAF+R FVS N GILL PV
Sbjct: 571 DVFAGNPEHLIKQQAELKSMLSVWSAAIDALTAFVRRFVS-----CNDGILLQPVLANLR 625
Query: 727 XXXXXXXXXXXXXXPNVNSALNLFTTRTLMAYQSLSNPMVYKSEHQQMLQLCSSPFSDPS 786
+V + +++ R L+AYQS+ +P+ YKSEHQQ++QLC++P+ DPS
Sbjct: 626 SALSCVSTMANKRFSDVKTLVDILIIRILIAYQSIPDPLAYKSEHQQIIQLCTTPYRDPS 685
Query: 787 GWEESSCLKFLLDKRDNSLGPWIPGRDSFEDELRAFDGGVDGFLPCVWDVEMSNFPQPES 846
G+EESSCLK LLDKRD LGPWIPGRD FEDELR F GG DG P VW+ ++S+FP PE+
Sbjct: 686 GFEESSCLKSLLDKRDAWLGPWIPGRDWFEDELRYFQGGEDGLAPSVWESKVSSFPLPET 745
Query: 847 VSKMLVNQMLLCYGSIFACQDNTVKIRLLNNLDQCLKSGKKQSWFMTVVTNSCVALLSGL 906
V K LVNQM+LC+G +FA QD+ + LL+ + QCLK+GKKQ W +TN C LL+GL
Sbjct: 746 VKKTLVNQMVLCFGIMFASQDSQGMLSLLSVIQQCLKAGKKQQWRTASLTNICAGLLAGL 805
Query: 907 KEFLTLRGAQSLSTDILSMVQSTFKGILLESEISTAQRRAACEGLGLLARIGNDAFTARM 966
K LR Q L+T++LS Q+ F+ IL E +I +QRRAACEGLGLLAR+GND FTARM
Sbjct: 806 KALHALR-PQQLTTEVLSSGQAIFQNILTEGDICASQRRAACEGLGLLARLGNDIFTARM 864
Query: 967 ARSLLGELITPIDLSYTASVTLSLGCIHRAAGGMALCTLVTPT----------------L 1010
R LLG+L D +Y S+ L+LGCIH +AGGMAL +LV T +
Sbjct: 865 TRVLLGDLSGVTDPNYGGSIALALGCIHHSAGGMALSSLVPATVNSVSSLTKTSVLGLKI 924
Query: 1011 WSLHALLLTIEAAGLSYVSQVQGTLFLAMEILLLEENGYVDLRQEIGHLINAIVAVIGPE 1070
W+LH LLLTIEAAGLS+VS VQ L LA++ILL EE+G++DL Q IG LINAIVAV+GPE
Sbjct: 925 WALHGLLLTIEAAGLSFVSHVQAALGLALDILLTEESGWIDLSQGIGRLINAIVAVLGPE 984
Query: 1071 LAP-------------EISSSSETATLIESVRFAQQLVLFAPQAVPVHSHVQSLIPTLYS 1117
L+P EISS E TL+ESV F QQL+LFAPQAV VH HV++L+ TL S
Sbjct: 985 LSPGSILFSRCKSVIAEISSWQEIPTLLESVCFTQQLILFAPQAVSVHIHVKNLLMTLAS 1044
Query: 1118 RQPSLRHLAVSTLRHLIERDPAAMINQNIEENLFSMLDEETDSEIAALVRSTIIRLLYTS 1177
RQP +R L+VSTLRHL+E+DP ++I++ IE+NLF MLDEETDSEI L+RST+IRLLY +
Sbjct: 1045 RQPIIRRLSVSTLRHLVEKDPVSVIDEQIEDNLFQMLDEETDSEIGNLIRSTLIRLLYAT 1104
Query: 1178 CPLRPSRWLAVLRNMGHCHGGGTFHPAAGAEFSSLFSVSYTLAMVMGVMDCLAEVLATSI 1237
CP RPSRW+ + RNM G AE TSI
Sbjct: 1105 CPSRPSRWMLICRNMALAASAGR-----SAE--------------------------TSI 1133
Query: 1238 ARNTSEGLSSSGHDPVDSNAENDIYYGADEDNMISSSKQEKTNWSANKFSQFPQRNKHLR 1297
A N DP + EN G D+++M+SSS S P ++K LR
Sbjct: 1134 AEN----------DPAYTR-EN---LGDDDEDMVSSS-------SGKSIRANPDKDKTLR 1172
Query: 1298 YRTRVFAAECVSHVPVAVGTEPAHFDLLLARSAVAEGVHLSNDWLILKLQELVSLSYQIS 1357
YRTRVFAAEC+S +P AVG + AHFD+LLAR+ +A S DWL+L+LQEL+SL+YQIS
Sbjct: 1173 YRTRVFAAECLSLLPEAVGNDAAHFDILLARN-LASNRQSSGDWLVLQLQELISLAYQIS 1231
Query: 1358 TGQFEGMQPIGVKLLCLIMDKFGMAVDPEFPGHILLEQFQAQLVSAVRTAISTASSPLLL 1417
T QFE M+PIGV LL I++KF + DPE PGH+LLEQ+QAQL+SAVRTA+ S P+LL
Sbjct: 1232 TIQFENMRPIGVGLLSTILEKFKLVADPELPGHLLLEQYQAQLLSAVRTALDANSGPVLL 1291
Query: 1418 EAGLELATKVMTSSVIGGDRVALNRLFLLICRPLNDIEDLFYPSFADWVV---------- 1467
EAGL+LATK+MTS +I D+VA+ R+F L+ RPLND +L+YPSFA+WV
Sbjct: 1292 EAGLQLATKIMTSGIIRSDQVAVKRIFSLLSRPLNDFNELYYPSFAEWVTSKIKIRLLAA 1351
Query: 1468 ---LKCYTYQFLRMKE-NIPDEHQQXXXXXXXXXXXXGKYWIGALKDYSSISFGLHSRIN 1523
LKCY + FLR +P E + G+YWI LK YS I + + +
Sbjct: 1352 HASLKCYIFTFLRKHHGEVPVEFEALLPMFSKSSDLLGRYWIQVLKGYSYICLCQNLKKS 1411
Query: 1524 HKPFLDGIQSFLVSSKAKEYLDEVWALILQATALDAAPLEFEMDDSEDTLGQTFISGHSM 1583
FLD I VS + + L+E W +ILQA LDA P+ +++ D ++ IS H M
Sbjct: 1412 QCSFLDEILPHTVSRRLQPCLEEAWPVILQALVLDAIPVNHSVEEFSD---RSLISTHRM 1468
Query: 1584 VKLNLTEFKFLWGLSVLVL---CHTQPSM-----SNSAIKINLDRN-NEKKIGGLVVCAG 1634
V L +F+FLWG +VLVL H SM S++ IK + D + NE GL
Sbjct: 1469 VTLEAEDFQFLWGFAVLVLFQGMHPASSMQVIPFSSAKIKSSGDSSINESSFQGL----- 1523
Query: 1635 LDNPRPCDQMLLVLSSLTSQVFFSMNFLTVDTCQELLQALTYA---DCS-SAPVVCLFSQ 1690
+ + L V SL++ FFS FL++D CQELLQ L+Y+ D S V + Q
Sbjct: 1524 ----KLYEIALPVFQSLSAGRFFSSGFLSIDLCQELLQVLSYSFHMDSSWDILAVSVVQQ 1579
Query: 1691 IIRLCPDNXXXXXXXXXXALEFYSWYLATILQSRCG-SSQECLSNSLISELSVATETMAC 1749
I + CP + +E YL IL S + + ++++S L ++ +T+
Sbjct: 1580 ISQNCPKDFLESEEFAYSTIELCLGYLFKILHRHNEISPDDGIWDNMLSPLFISIKTLVK 1639
Query: 1750 RMKNEHWWK---LMMLLVSTSYQSFQQVPSNLCLSNIISFLQNTLPIM---------KKY 1797
R + +H L LL + Y+ +QVP++ L + +++T ++ K Y
Sbjct: 1640 RFELKHRLNSAPLAFLL--SGYKCIRQVPTDAYLPKALEIVKSTNDLLLELTRASSQKPY 1697
Query: 1798 LQERAEPGDECANCEVALGALVSLVAYLCTQCSNRISMLDNKISDSYKLLAKILYFCLGE 1857
D + GA + +V L C N I ++D+K S KLL L FCL +
Sbjct: 1698 TDGTNFAADSGFHLRAIFGACLHMVGDLTRDCINGIQLVDSKRSGLRKLLQLKLVFCLEQ 1757
Query: 1858 AIALAKLVDEIGYHGENCTSNELMSGSFRHCTQVVQASLCSTTIQVQMLGVHVLKVSAQR 1917
+LAKL E + +N + + C + A + + +QVQ + VLK QR
Sbjct: 1758 LFSLAKLAYEFDCPVDETNTNSICIVMLKSCQISIAAVVKDSNVQVQATVLQVLKSLVQR 1817
Query: 1918 ELAEGSQTATHSFMVLFV-ELLADVFSVIQTALKIRWHSLTTLFLQGCSSKDSVSVIDEC 1976
+ SF++LFV EL+ D+ S++Q AL ++ + +SV + EC
Sbjct: 1818 Y----NNPEEKSFVILFVGELIGDIVSLMQRALLVK-----------PVNTESVVIAGEC 1862
Query: 1977 LKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQELTEVNNISKKLFSHFIQI 2036
L+ + L + + + + + L L+ +L+VF +S SQE+ E+ N++ +L SH Q+
Sbjct: 1863 LRFIMLLQTHSITDELQKGFMSLFLEVVLVVFSKTSDGVSQEVLELRNVAVRLVSHLAQL 1922
Query: 2037 PSAAIHIKDIMLSAAPTKRQLLQDMIRASVTQ 2068
PS+A+H KD++LS T RQ LQD+IRASV++
Sbjct: 1923 PSSAVHFKDVLLSLPVTHRQQLQDIIRASVSK 1954
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 46,588,232
Number of extensions: 1865295
Number of successful extensions: 5134
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5120
Number of HSP's successfully gapped: 3
Length of query: 2366
Length of database: 11,106,569
Length adjustment: 115
Effective length of query: 2251
Effective length of database: 7,953,729
Effective search space: 17903843979
Effective search space used: 17903843979
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)