BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0499000 Os06g0499000|J100068L03
         (206 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G25680.1  | chr3:9349693-9352258 FORWARD LENGTH=559            122   2e-28
AT5G23890.1  | chr5:8058789-8063005 FORWARD LENGTH=947             82   2e-16
AT5G52410.2  | chr5:21275981-21279293 FORWARD LENGTH=762           70   7e-13

>AT3G25680.1 | chr3:9349693-9352258 FORWARD LENGTH=559
          Length = 558

 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 113/175 (64%)

Query: 5   LQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQLSVMGEIMEELINRGDIKRYW 64
            QP++PVTKAQAA ALTSG+M + I  EL+RLEAE+ SQ +   EI  EL+ +G+I+++W
Sbjct: 356 FQPNRPVTKAQAAVALTSGKMVKAITAELSRLEAESLSQKAETEEIRSELLEKGEIRQFW 415

Query: 65  EDKMKVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMNLRSEI 124
           ++K++ E  R   +++     + E+  EKT +EK  A  LKE+ A++ Q Q L +L  EI
Sbjct: 416 DEKIQAERSRGFEMEELYLSRVNEVEEEKTTQEKWSAERLKEKAAIDCQKQLLNSLTEEI 475

Query: 125 DGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEALTMLRSW 179
           D M  RL  +    +TE   L+++  D+  K +++ + +S LEAE EAL +LRSW
Sbjct: 476 DEMSQRLISDKSVYLTEHSKLQEMLSDLQSKLESLIDKRSILEAEVEALRILRSW 530



>AT5G23890.1 | chr5:8058789-8063005 FORWARD LENGTH=947
          Length = 946

 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 102/180 (56%), Gaps = 4/180 (2%)

Query: 2   TRCLQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQ--LSVMGEIMEELINRGD 59
           TR  QPHKPVTK QAA AL+SG   +++ +EL R+EAE+ ++  +S    ++ E+    D
Sbjct: 609 TRLFQPHKPVTKGQAAIALSSGEASDIVSEELARIEAESMAEKAVSAHNALVAEV--EKD 666

Query: 60  IKRYWEDKMKVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMN 119
           +   +E ++ +E  +  AV+K  +    EL   +  RE+E   L+KER A+E + + L  
Sbjct: 667 VNASFEKELSMEREKIEAVEKMAELAKVELEQLREKREEENLALVKERAAVESEMEVLSR 726

Query: 120 LRSEIDGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEALTMLRSW 179
           LR + +   + L     E+  E++ +  L  +   + Q +S+ +  LE E++AL+M RSW
Sbjct: 727 LRRDAEEKLEDLMSNKAEITFEKERVFNLRKEAEEESQRISKLQYELEVERKALSMARSW 786



>AT5G52410.2 | chr5:21275981-21279293 FORWARD LENGTH=762
          Length = 761

 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 98/180 (54%), Gaps = 4/180 (2%)

Query: 2   TRCLQPHKPVTKAQAAAALTSGRMEEVIRDELNRLEAENQSQLSVMGEIMEELINR--GD 59
           TR  QP K VTKAQ A +L  G   EV+ +EL R+EAE  ++  V      EL+ +   D
Sbjct: 421 TRLFQPSKAVTKAQTAVSLAIGDAFEVVGEELARIEAEAMAENVVCAH--NELVAQVEKD 478

Query: 60  IKRYWEDKMKVEEIREVAVDKQLQHVLQELANEKTDREKELAVLLKERTALEHQNQELMN 119
           I   +E ++  E+    AV+K  +    ELA  + ++E+E   L +ERT++E + + L  
Sbjct: 479 INASFEKELLREKEIVDAVEKLAEEAKSELARLRVEKEEETLALERERTSIETEMEALAR 538

Query: 120 LRSEIDGMYDRLAMESLEVMTEEQNLEKLSLDVNRKHQAVSESKSYLEAEKEALTMLRSW 179
           +R+E++     LA    E+  E++  ++L   V  ++Q +   ++ LE E+ AL++ R W
Sbjct: 539 IRNELEEQLQSLASNKAEMSYEKERFDRLQKQVEDENQEILRLQNELEVERNALSIARDW 598



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.125    0.329 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,218,704
Number of extensions: 117998
Number of successful extensions: 823
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 3
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)