BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0498800 Os06g0498800|AK107056
(176 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174 221 2e-58
AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178 160 3e-40
AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178 152 6e-38
AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176 144 2e-35
AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176 137 2e-33
AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176 132 1e-31
>AT1G18100.1 | chr1:6228049-6230110 REVERSE LENGTH=174
Length = 173
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 1 MASHVDPLVVGRVIGDVVDLFVPTTAMSVRFGTKDLTNGCEIKPSVAAAPPAVQIAGRVN 60
MA+ VDPLVVGRVIGDV+D+F+PT MSV FG K +TNGCEIKPS A PP V I+G +
Sbjct: 1 MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHSD 60
Query: 61 ELFALVMTDPDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPPVGIHRYVM 120
EL+ LVMTDPDAPSPSEP MREW+HW+VV+IPGGT+PS+G ++PYM PRPPVGIHRY++
Sbjct: 61 ELYTLVMTDPDAPSPSEPNMREWVHWIVVDIPGGTNPSRGKEILPYMEPRPPVGIHRYIL 120
Query: 121 VLFQQKXXXXXXXXXXXXXXXXXXXXXXXXXHDLGLPVAALYFNAQKEPANRRR 174
VLF+Q DLGLPVA +YFNAQKEPA+RRR
Sbjct: 121 VLFRQN-SPVGLMVQQPPSRANFSTRMFAGHFDLGLPVATVYFNAQKEPASRRR 173
>AT5G03840.1 | chr5:1024760-1025796 REVERSE LENGTH=178
Length = 177
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 5 VDPLVVGRVIGDVVDLFVPTTAMSVRFGTKDLTNGCEIKPSVAAAPPAVQI-AGRVNELF 63
++PL++GRV+GDV+D F PTT M+V + K ++NG E+ PS ++ P V+I G + F
Sbjct: 9 IEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFF 68
Query: 64 ALVMTDPDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPPVGIHRYVMVLF 123
LVM DPD P PS+P ++E LHW+V NIPG TD + G VV Y PRP +GIHR+V VLF
Sbjct: 69 TLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRFVFVLF 128
Query: 124 QQKXXXXXXXXXXXXXXXXXXXXXXXXXHDLGLPVAALYFNAQKEPANRRR 174
+QK +DLGLPVAA++FNAQ+E A R+R
Sbjct: 129 RQK--QRRVIFPNIPSRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 177
>AT5G62040.1 | chr5:24922810-24923709 FORWARD LENGTH=178
Length = 177
Score = 152 bits (385), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 4/176 (2%)
Query: 1 MASHVDPLVVGRVIGDVVDLFVPTTAMSVRFGTKDL-TNGCEIKPSVAAAPPAVQIAGR- 58
M+ ++PL+VGRVIGDV+++F P+ M V F + + +NG E+ PS+ + P V+I G+
Sbjct: 1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQD 60
Query: 59 VNELFALVMTDPDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPPVGIHRY 118
+ F L+M DPDAPSPS P MRE+LHW+V +IPG TD S G +V Y P+P GIHRY
Sbjct: 61 LRSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASFGREIVRYETPKPVAGIHRY 120
Query: 119 VMVLFQQKXXXXXXXXXXXXXXXXXXXXXXXXXHDLGLPVAALYFNAQKEPANRRR 174
V LF+Q+ L PVAA+YFNAQ+E A RRR
Sbjct: 121 VFALFKQR--GRQAVKAAPETRECFNTNAFSSYFGLSQPVAAVYFNAQRETAPRRR 174
>AT2G27550.1 | chr2:11773417-11774509 FORWARD LENGTH=176
Length = 175
Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 102/171 (59%), Gaps = 4/171 (2%)
Query: 6 DPLVVGRVIGDVVDLFVPTTAMSVRFGT-KDLTNGCEIKPSVAAAPPAVQI-AGRVNELF 63
DPL+VGRVIGDVVD + M+V + + K + NG E+ PSV P V++ G + F
Sbjct: 7 DPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRSFF 66
Query: 64 ALVMTDPDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPPVGIHRYVMVLF 123
LVMTDPD P PS+P +RE LHW+V +IPG TD S G ++ Y PRP +GIHR+V +LF
Sbjct: 67 TLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSFGKEIIGYEMPRPNIGIHRFVYLLF 126
Query: 124 QQKXXXXXXXXXXXXXXXXXXXXXXXXXHDLGLPVAALYFNAQKEPANRRR 174
+Q +DLGLPVAA++FN Q+E A RRR
Sbjct: 127 KQ--TRRGSVVSVPSYRDQFNTREFAHENDLGLPVAAVFFNCQRETAARRR 175
>AT4G20370.1 | chr4:11001011-11002965 REVERSE LENGTH=176
Length = 175
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 98/174 (56%), Gaps = 4/174 (2%)
Query: 3 SHVDPLVVGRVIGDVVDLFVPTTAMSVRFGTKDLTNGCEIKPSVAAAPPAVQIAGR-VNE 61
S DPLVVG V+GDV+D F ++ V +G +++TNG +++PS P V+I G
Sbjct: 4 SRRDPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDDFRN 63
Query: 62 LFALVMTDPDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPPVGIHRYVMV 121
+ LVM DPD PSPS P RE+LHWLV +IP T + G+ VV Y PRPP GIHR V+V
Sbjct: 64 FYTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRIVLV 123
Query: 122 LFQQKXXXXXXXXXXXXXXXXXXXXXXXXXHDLGLPVAALYFNAQKEPANRRRR 175
LF+Q ++LGLPVAA YFN Q+E RR
Sbjct: 124 LFRQ---LGRQTVYAPGWRQQFNTREFAEIYNLGLPVAASYFNCQRENGCGGRR 174
>AT1G65480.1 | chr1:24331510-24333689 FORWARD LENGTH=176
Length = 175
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 97/171 (56%), Gaps = 4/171 (2%)
Query: 6 DPLVVGRVIGDVVDLFVPTTAMSVRFGTKDLTNGCEIKPSVAAAPPAVQIAGR-VNELFA 64
DPL+V RV+GDV+D F + + V +G +++TNG +++PS P V+I G + +
Sbjct: 7 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGEDLRNFYT 66
Query: 65 LVMTDPDAPSPSEPTMREWLHWLVVNIPGGTDPSQGDVVVPYMGPRPPVGIHRYVMVLFQ 124
LVM DPD PSPS P +RE+LHWLV +IP T + G+ +V Y P P GIHR V +LF+
Sbjct: 67 LVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVCYENPSPTAGIHRVVFILFR 126
Query: 125 QKXXXXXXXXXXXXXXXXXXXXXXXXXHDLGLPVAALYFNAQKEPANRRRR 175
Q ++LGLPVAA+++N Q+E RR
Sbjct: 127 Q---LGRQTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNCQRESGCGGRR 174
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.139 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,627,076
Number of extensions: 140773
Number of successful extensions: 253
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 6
Length of query: 176
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 84
Effective length of database: 8,584,297
Effective search space: 721080948
Effective search space used: 721080948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)