BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0495800 Os06g0495800|J100069N08
(360 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G23100.1 | chr5:7753557-7754390 FORWARD LENGTH=278 66 3e-11
AT5G06990.1 | chr5:2169699-2170484 FORWARD LENGTH=262 63 2e-10
AT2G41660.1 | chr2:17367945-17368838 FORWARD LENGTH=298 63 3e-10
AT4G39610.1 | chr4:18393808-18394602 REVERSE LENGTH=265 59 4e-09
AT3G25640.1 | chr3:9333775-9334578 FORWARD LENGTH=268 57 2e-08
AT2G21990.1 | chr2:9359573-9360331 REVERSE LENGTH=253 56 3e-08
AT5G42680.1 | chr5:17114640-17115356 FORWARD LENGTH=239 54 1e-07
AT2G37880.1 | chr2:15860705-15861448 FORWARD LENGTH=248 51 8e-07
>AT5G23100.1 | chr5:7753557-7754390 FORWARD LENGTH=278
Length = 277
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 138 LTGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALECE 192
+ GT+FG RG VH ++Q DP + PA ++ELA +G LV+EMASGLVR+ALEC+
Sbjct: 90 VVGTLFGSRRGHVHFSIQKDPNSPPAFLIELATPISG-LVKEMASGLVRIALECD 143
>AT5G06990.1 | chr5:2169699-2170484 FORWARD LENGTH=262
Length = 261
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Query: 138 LTGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALECEK 193
+TGT+FG + RV+LA+Q +PR+ P ++LELA TG L++++ GLVR+ALECEK
Sbjct: 93 VTGTLFGYRKTRVNLAVQENPRSLPILLLELA-IPTGKLLQDLGVGLVRIALECEK 147
>AT2G41660.1 | chr2:17367945-17368838 FORWARD LENGTH=298
Length = 297
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%), Gaps = 1/56 (1%)
Query: 138 LTGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALECEK 193
+TGT++G RG V ++Q + R+ P ++L+LA ST LV+EM+SGLVR+ALECEK
Sbjct: 129 VTGTLYGHKRGHVTFSVQYNQRSDPVLLLDLA-MSTATLVKEMSSGLVRIALECEK 183
>AT4G39610.1 | chr4:18393808-18394602 REVERSE LENGTH=265
Length = 264
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 138 LTGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALECEKA--A 195
+TGT+FG +GRV L++Q +P+ P++++ELA T L +E+++G+VR+ALE EK A
Sbjct: 97 ITGTLFGYRKGRVSLSIQENPKCLPSLVVELA-MQTTTLQKELSTGMVRIALETEKQPRA 155
Query: 196 PPTNPGTYTNSSCSHPPMVFVLCSRTHRSIIRRRE 230
N T + P+ + C +RE
Sbjct: 156 DNNNSKTEKKTDILEEPLWTMYCKGEKTGYGVKRE 190
>AT3G25640.1 | chr3:9333775-9334578 FORWARD LENGTH=268
Length = 267
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 138 LTGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALE 190
+ GT+FG RG V+ A+Q DP PA++++L T LVREMASGLVR+ALE
Sbjct: 98 VVGTLFGNRRGHVYFAVQDDPTRLPAVLIQLPT-PTSVLVREMASGLVRIALE 149
>AT2G21990.1 | chr2:9359573-9360331 REVERSE LENGTH=253
Length = 252
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 138 LTGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALECEK 193
+TGT+FG +GRV L++Q PR P++++ELA T L +E++ G+VR+ALE EK
Sbjct: 93 VTGTLFGYRKGRVSLSIQESPRCLPSLVVELA-MQTMVLQKELSGGMVRIALETEK 147
>AT5G42680.1 | chr5:17114640-17115356 FORWARD LENGTH=239
Length = 238
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 139 TGTVFGRLRGRVHLALQTDPRAAPAMMLELAGYSTGALVREMASGLVRLALECE 192
TGT+FG +GRV LA+Q DP P ++EL T AL +EMAS VR+ALE E
Sbjct: 78 TGTIFGFRKGRVFLAIQEDPHCLPIFIIELP-MLTSALQKEMASETVRIALESE 130
>AT2G37880.1 | chr2:15860705-15861448 FORWARD LENGTH=248
Length = 247
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 7/65 (10%)
Query: 137 VLTGTVFGRLRGRVHLALQTDPRAA-PAMMLELAGYSTGALVREMASGLVRLALECEKAA 195
++ GT+FGR +G V +Q D + P ++LEL+ +T LV EM SGLVR+ALEC
Sbjct: 80 MVIGTIFGRRKGHVWFCVQHDRLSVKPILLLELS-IATSQLVHEMGSGLVRVALEC---- 134
Query: 196 PPTNP 200
PT P
Sbjct: 135 -PTRP 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.133 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,768,975
Number of extensions: 92383
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 8
Length of query: 360
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 260
Effective length of database: 8,364,969
Effective search space: 2174891940
Effective search space used: 2174891940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)