BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0492700 Os06g0492700|Os06g0492700
         (131 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15930.1  | chr4:9036344-9037825 FORWARD LENGTH=124             80   3e-16
AT5G20110.1  | chr5:6791542-6793253 REVERSE LENGTH=210             49   7e-07

>AT4G15930.1 | chr4:9036344-9037825 FORWARD LENGTH=124
          Length = 123

 Score = 80.1 bits (196), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 50/64 (78%), Gaps = 1/64 (1%)

Query: 61  GHKIQIKSANMKEEMRQEAFDIDRVAFEKHTMEKDIVEYI-KEFDKNHGPTWHCIVGHNF 119
           G +  IKSA+MK++M++EA +I   AFEK+++EKDI E I KEFDK HG TWHCIVG NF
Sbjct: 37  GKRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNF 96

Query: 120 GLFL 123
           G ++
Sbjct: 97  GSYV 100



>AT5G20110.1 | chr5:6791542-6793253 REVERSE LENGTH=210
          Length = 209

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 64  IQIKSANMKEEMRQEAFDIDRV---AFEKHTMEKDIVEYIKEFDKNHGPTWHCIVGHNFG 120
           ++I +A+M   M+  AF   R+   + EK + +       KEFDK +GP WHCIVG +FG
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query: 121 LFL 123
            F+
Sbjct: 177 SFV 179



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,704,500
Number of extensions: 53699
Number of successful extensions: 189
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 2
Length of query: 131
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 44
Effective length of database: 8,721,377
Effective search space: 383740588
Effective search space used: 383740588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)