BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0484500 Os06g0484500|AK108194
         (214 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12345.1  | chr3:3930333-3930893 REVERSE LENGTH=187             84   8e-17

>AT3G12345.1 | chr3:3930333-3930893 REVERSE LENGTH=187
          Length = 186

 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 115 VTLPPVPLREARSSVGVPVEFGFSAYSERLNXXXXXXXXXXXXXXELGSGKALVKYHQPA 174
           + LPPV L+EA S  G+ VE GFS +SER+N              EL +GK+++ YH P+
Sbjct: 98  IYLPPVSLKEAVSG-GLKVEPGFSPFSERINGRIAGLGLTALLLVELATGKSVLNYHTPS 156

Query: 175 TLFLQVYTVAAAGAVFVKYEKERISVW 201
            +FLQ+Y VAA  A+FVK EKE++SVW
Sbjct: 157 VVFLQIYFVAAVSAMFVKIEKEKVSVW 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,175,411
Number of extensions: 44392
Number of successful extensions: 57
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)