BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0354700 Os06g0354700|AK066777
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13800.2 | chr5:4452063-4454141 REVERSE LENGTH=485 539 e-153
AT4G36530.2 | chr4:17240120-17241770 REVERSE LENGTH=379 127 2e-29
AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360 107 1e-23
AT5G38520.2 | chr5:15421605-15423234 FORWARD LENGTH=375 84 1e-16
AT4G25290.1 | chr4:12941486-12944994 REVERSE LENGTH=693 83 3e-16
>AT5G13800.2 | chr5:4452063-4454141 REVERSE LENGTH=485
Length = 484
Score = 539 bits (1388), Expect = e-153, Method: Compositional matrix adjust.
Identities = 261/449 (58%), Positives = 331/449 (73%), Gaps = 20/449 (4%)
Query: 39 RSAILCVRSGTASNPADSGKVHASHGFYVSDVDAALQGIPKKVGEIEKMIIPSLPE---G 95
+ + L +RSG S G+ V + D L I ++ K++IP LP+ G
Sbjct: 39 KKSRLVIRSGN------------SDGYVVGENDD-LGRIARRGESTSKVLIPGLPDESNG 85
Query: 96 PESSLISTGFWEWKPKLSVYYEKSGIDNSKAPSVLFLPGFGVGTFHFEKQLKDLGRDYKV 155
++ IS EWKPKL V+YEK+G DN AP+VLFLPGFGVG+FH+EKQL DLGRDY+V
Sbjct: 86 EIAARISHSHCEWKPKLRVHYEKAGCDNLDAPAVLFLPGFGVGSFHYEKQLTDLGRDYRV 145
Query: 156 WTMDFLGQGMSLPCEDPAP--KSTSGELDEDTYWGFGQELQPWAEELVYSIDLWRDQVQH 213
W +DFLGQG+SLP EDP + TS D++ +WGFG + +PWA++LV+S+DLWRDQVQ+
Sbjct: 146 WAIDFLGQGLSLPTEDPTTMTEETSSSEDKEPFWGFGDKTEPWADQLVFSLDLWRDQVQY 205
Query: 214 FIEEVIGEPVYIVGNSLGGFVSLYLAASCPHLVKGVTLLNATPFWGFLPNPATSPRLSKI 273
F+EEVIGEPVYI GNSLGG+V+LY AA+ PHLVKGVTLLNATPFWGF PNP SP+L+++
Sbjct: 206 FVEEVIGEPVYIAGNSLGGYVALYFAATHPHLVKGVTLLNATPFWGFFPNPVRSPKLARL 265
Query: 274 FPWAGTFPLPSFVRKLTETVWQKISDPRSIQGILKQVYADHSTNVDMVFSRIIETTQHPX 333
FPW G FPLP V+K+TE VWQKISDP SI ILKQVY DHS NVD VFSRI+E TQHP
Sbjct: 266 FPWPGAFPLPERVKKITELVWQKISDPESIAEILKQVYTDHSINVDKVFSRIVEVTQHPA 325
Query: 334 XXXXXXXIMCAPKGQISFEEALSRCQRQGIPISLMYGREDPWVRPIWGIKVKQQVPESPY 393
IM AP G++SF EALSRC+ + I LMYGREDPWVRP+WG K+K+++P +PY
Sbjct: 326 AAASFASIMLAPGGELSFSEALSRCKENNVQICLMYGREDPWVRPLWGKKIKKEIPNAPY 385
Query: 394 YEISPAGHCPHDEVPEVINYLLRGWLKNVESEGSVAVPFLE--EPSYAENGVSRELEFVR 451
YEISPAGHCPHDEVPEV+NYL+RGW+K++ES G A+P LE E + E+ + RE+EF R
Sbjct: 386 YEISPAGHCPHDEVPEVVNYLMRGWIKHLESGGFEALPLLEDTEEDWEESRIGREIEFPR 445
Query: 452 GGSKKSVHVRLFGSKISLWSQLRSLLKSN 480
G KK+V++ L+GS + W +R +S+
Sbjct: 446 DGWKKAVNLWLYGSNYTYWRGVRESFRSS 474
>AT4G36530.2 | chr4:17240120-17241770 REVERSE LENGTH=379
Length = 378
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/334 (28%), Positives = 144/334 (43%), Gaps = 58/334 (17%)
Query: 104 GFWEWKPKLSVYYEKSGIDNSKAPSVLFLPGFGVGTFHFEKQLKDLGRDYKVWTMDFLGQ 163
FWEW+ ++Y G + ++ + GFG FH+ + +L + YKV+ +D LG
Sbjct: 82 NFWEWRGH-KIHYVVQG----EGSPLVLIHGFGASVFHWRYNIPELAKKYKVYALDLLGF 136
Query: 164 GMSLPCEDPAPKSTSGELDEDTYWGFGQELQPWAEELVYSID--LWRDQVQHFIEEVIGE 221
G W+++ + D +W DQV F++EV+ E
Sbjct: 137 G-------------------------------WSDKALIEYDAMVWTDQVIDFMKEVVKE 165
Query: 222 PVYIVGNSLGGFVSLYLAASCPHLVKGVTLLNATPFWGFLPNPATSPRLSKIFPWAGTFP 281
P +VGNSLGGF +L +A P V GV LLN+ + A S + + A
Sbjct: 166 PAVVVGNSLGGFTALSVAVGLPEQVTGVALLNSAGQFA-----AESRKREE----ADETV 216
Query: 282 LPSFVRKLTETVWQKI---------SDPRSIQGILKQVYADHSTNVDMVFSRIIETTQHP 332
+ F+ K + ++Q++ P I+ +LK VY D + D + I + P
Sbjct: 217 ITKFIVKPLKEIFQRVVLGFLFWQAKQPSRIESVLKSVYIDSTNVDDYLVESISKPATDP 276
Query: 333 XXXXXXXXIMCAPKGQISFEEALSRCQRQGIPISLMYGREDPWVRPIWGIKVKQQVPESP 392
+M S S + P+ L++G DPWV P K+K S
Sbjct: 277 NAGEVYYRLMTRFLTNQSRYTLDSVLSKMTCPLLLVWGDLDPWVGPAKAEKIKAFYSNSS 336
Query: 393 YYEISPAGHCPHDEVPEVINYLLRGWLK-NVESE 425
+ AGHCPHDEVPE +N L WL N+ S+
Sbjct: 337 LVHLQ-AGHCPHDEVPEAVNKALLDWLSINIASK 369
>AT5G19850.1 | chr5:6709976-6711662 REVERSE LENGTH=360
Length = 359
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 158/365 (43%), Gaps = 54/365 (14%)
Query: 65 FYVSDVDAALQGIPKKVGEIEKMIIPSLPEGPESSL-ISTGFWEWKPKLSVYYEKSGIDN 123
F + A+ P K G + E L + T W+WK S+ Y+ +G
Sbjct: 36 FLRQSISTAIVRSPTKRGIVSVSCSSVTDEASSEELQVRTLTWKWK-GYSIRYQCAG--- 91
Query: 124 SKAPSVLFLPGFGVGTFHFEKQLKDLGRDYKVWTMDFLGQGMSLPCEDPAPKSTSGELDE 183
+ P+++ + GFG + H+ K LG+ ++V+++D +G G S + P P+ GE
Sbjct: 92 TSGPALVLVHGFGANSDHWRKNTPILGKTHRVYSIDLIGYGYS---DKPNPREFGGE--- 145
Query: 184 DTYWGFGQELQPWAEELVYSIDLWRDQVQHFIEEVIGEPVYIVGNSLGGFVSLYLAASCP 243
P+ Y+ + W +Q+ F +V+ + + + NS+GG V L A S P
Sbjct: 146 -----------PF-----YTFETWGEQLNDFCLDVVKDEAFFICNSIGGLVGLQAAVSKP 189
Query: 244 HLVKGVTLLNATPFWGFLPNPATSPRLSKIF--PWAGTFPLPSFVRKLTET-----VWQK 296
+ +G+ L+N S R+ I P+ G + SF L T ++
Sbjct: 190 EICRGLMLIN------------ISLRMLHIKKQPFIGRPFIKSFQNLLRNTPVGKLFFKS 237
Query: 297 ISDPRSIQGILKQVYADHSTNVDMVFSRIIETTQHPXXXXXXXXIMCAPKGQISFEEA-L 355
I+ P +++ IL Q Y D S D + I+ P +C G + + L
Sbjct: 238 IAKPETVKSILCQCYHDSSQVTDELVEAILRPGLEPGAVDVFLEFICYSGGPLPEDLLPL 297
Query: 356 SRCQRQGIPISLMYGREDPWVRPIWGIKVKQQVPESPYYEISP-AGHCPHDEVPEVINYL 414
+C P+ + +G +DPW PI + + + P AGHCP DE PE++N L
Sbjct: 298 VKC-----PVLIAWGEKDPW-EPIELGRAYSNFDAVEDFVVLPDAGHCPQDEKPEMVNPL 351
Query: 415 LRGWL 419
+ ++
Sbjct: 352 IESFV 356
>AT5G38520.2 | chr5:15421605-15423234 FORWARD LENGTH=375
Length = 374
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 139/344 (40%), Gaps = 62/344 (18%)
Query: 106 WEWKPKLSVYYEKSGIDNSKAP---SVLFLPGFGVGTFHFEKQLKDLGRDYKVWTMDFLG 162
W+WK + SV Y P +VL + GFG H+ + + L +++ V+ +D LG
Sbjct: 67 WKWKGEYSVNYFVKDSPEEVTPASQTVLLVHGFGASIPHWRRNINALSKNHTVYAIDLLG 126
Query: 163 QGMSLPCEDPAPKSTSGELDEDTYWGFGQELQPWAEELVYSIDLWRDQVQHFIEEVIGEP 222
G S D P GF ++ WAE ++ +F+EEV+ +P
Sbjct: 127 FGAS----DKPP-------------GFSYTMESWAELIL-----------NFLEEVVQKP 158
Query: 223 VYIVGNSLGGFVSLYLAA-------------SCPHLVKGVTLLNATPFWGFLPNPATSP- 268
++GNS+G + A+ S LVKG+ LLN G + N A
Sbjct: 159 TILIGNSVGSLACVIAASGTKFLIYLEKKTESRGDLVKGLVLLNCA---GGMNNKAVFDD 215
Query: 269 -RLSKIFPWAGTFPLPSFVRKLTETVWQKISDPRSIQGILKQVYADHSTNVDMVFSRIIE 327
R+ + P R + ++ ++ D +++ IL VY + D + I
Sbjct: 216 WRIKLLMPLLLLIDFLLKQRGIASALFNRVKDRENLKNILTNVYGNKDNVDDTLVEIIAG 275
Query: 328 TTQHPXXXXXXXXIMCAPKG--QISFEEALSRCQRQGIPISLMYGRED---PWVRPI--W 380
I+ P G I +++ P+ +++G +D P P+ +
Sbjct: 276 PANTEGALDAFVSILTGPPGPNPIKLIPEITK------PVLVLWGDQDGLTPLDGPVGKY 329
Query: 381 GIKVKQQVPESPYYEISPAGHCPHDEVPEVINYLLRGWLKNVES 424
+ Q+P Y + GHCP D+ P++++ L WL + S
Sbjct: 330 FTSLPDQLPNFNLYVLQGVGHCPQDDRPDLVHERLLPWLAQLSS 373
>AT4G25290.1 | chr4:12941486-12944994 REVERSE LENGTH=693
Length = 692
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 136/331 (41%), Gaps = 66/331 (19%)
Query: 105 FWEWKPKLSVYYEKSGIDNSKAPSVLFLPGFGVGTFHFEKQLKDL-GRDYKVWTMDFLGQ 163
W WK L Y + ++ P+VL + GFG H+ + ++ +VWT+
Sbjct: 399 IWRWKGYLIQY----TVVGNEGPAVLLVHGFGAFLEHYRDNVDNIVNSKNRVWTI----- 449
Query: 164 GMSLPCEDPAPKSTSGELDEDTYWGFGQELQPWAEELVYSIDLWRDQVQHFIEEVIGEPV 223
T GFG+ +P ++Y+ LW + ++ F+ EV+GEP
Sbjct: 450 ---------------------TVLGFGKSEKP---NIIYTELLWAELLRDFMAEVVGEPA 485
Query: 224 YIVGNSLGGFVSLYLAASCPHLVKGVTLLNA--TPFWGFLPNPATSPRLSKIFPWAGTFP 281
+ VGNS+GG+ +A P LVK V L+N+ G+ P P + R G+
Sbjct: 486 HCVGNSIGGYFVALMAFLWPALVKSVVLVNSAGNVVPGYSPLPISRERRVPFGAQFGSRL 545
Query: 282 LPSFVRKLTETVWQKISDPRSIQGILKQVYADHSTNV-DMVFSRIIETTQHPXXXXXXXX 340
L F++ +++ +LK Y D + + ++ ++ P
Sbjct: 546 LLFFLQ-------------LNVKKLLKDCYPVKPERADDFLVTEMLRASRDPGVVMVLES 592
Query: 341 I----MCAPKGQI--SFEEALSRCQRQGIPISLMYGREDPWVRPIWGIKVKQQVPESPYY 394
I + P + FEE Q G EDP P + + +++ +
Sbjct: 593 IFGFDLSLPLNYLLKGFEEKTLVIQ----------GMEDPISDPQKKVALLKELCPAMVI 642
Query: 395 EISPAGHCPHDEVPEVINYLLRGWLKNVESE 425
+ AGHCPHDE+ E +N ++ W+ V ++
Sbjct: 643 KKVKAGHCPHDEISEEVNPIICEWIVKVTND 673
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,619,792
Number of extensions: 537038
Number of successful extensions: 1187
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1177
Number of HSP's successfully gapped: 5
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)