BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0347100 Os06g0347100|AK063762
         (242 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51840.1  | chr3:19225653-19229008 REVERSE LENGTH=437          359   e-100
AT3G45300.1  | chr3:16621659-16624848 REVERSE LENGTH=410           97   8e-21
AT5G65110.1  | chr5:26009821-26012482 REVERSE LENGTH=693           52   3e-07

>AT3G51840.1 | chr3:19225653-19229008 REVERSE LENGTH=437
          Length = 436

 Score =  359 bits (922), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 164/241 (68%), Positives = 200/241 (82%)

Query: 1   VPGGWILNGQKRWPANGSFADVFVVLACNTSNNQINGFIVNGGSPGLKISKIENKTSLRV 60
           V GGW +NGQKRW  N +FAD+ ++ A NT+ NQINGFIV   +PGLK +KI NK  LR+
Sbjct: 193 VEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRM 252

Query: 61  VQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLRYLGE 120
           VQN DILL++VFVPD+DRLPG NSFQD  K L+ S V+VAW  IGI+ G+YD C RYL E
Sbjct: 253 VQNGDILLQNVFVPDEDRLPGVNSFQDTSKVLAVSRVMVAWQPIGISMGIYDMCHRYLKE 312

Query: 121 RKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWITKQA 180
           RKQFGAPLAAFQLNQ+KLV+MLGN+QAM+L+GWRLCKL+++G+MT GQASLGKAWI+ +A
Sbjct: 313 RKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKA 372

Query: 181 RETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREITGIASIRPTS 240
           RET +LGRELLGGNGI+ DF V KAFCD+E IYTYEG+Y++N LV  RE+TGIAS +P +
Sbjct: 373 RETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGIASFKPAT 432

Query: 241 R 241
           R
Sbjct: 433 R 433



>AT3G45300.1 | chr3:16621659-16624848 REVERSE LENGTH=410
          Length = 409

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 4/234 (1%)

Query: 1   VPGGWILNGQKRWPANGSFADVFVVLA---CNTSNNQINGFIVNGGSPGLKISKIENKTS 57
           V GG+ILNG K W  NG  A+  VV A       +  I  FI+  G  G   ++  +K  
Sbjct: 172 VDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLG 231

Query: 58  LRVVQNCDILLEDVFVPDDDRLPG-ANSFQDLVKALSFSCVIVAWISIGIAAGVYDACLR 116
           +R    C+++ E+ FVP+++ L         L+  L    +++A   +GI     D  L 
Sbjct: 232 MRGSDTCELVFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPLGIMQACLDNVLP 291

Query: 117 YLGERKQFGAPLAAFQLNQEKLVRMLGNIQAMWLLGWRLCKLHDSGRMTTGQASLGKAWI 176
           Y+ +R+QFG P+  FQ  Q K+  M   +Q+     + + +  D+G++     +      
Sbjct: 292 YIRQREQFGRPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGTILCA 351

Query: 177 TKQARETVALGRELLGGNGIVTDFHVGKAFCDMESIYTYEGSYEVNVLVAAREI 230
            ++A +      + LGGNG + ++  G+   D +      G+ E+  +V  RE+
Sbjct: 352 AERATQVALQAIQCLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGREL 405



>AT5G65110.1 | chr5:26009821-26012482 REVERSE LENGTH=693
          Length = 692

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 55/265 (20%)

Query: 5   WILNGQKRWPANGSFADVFVVLACNTSNNQ------INGFIV-------NGGSPGLKISK 51
           WI N       +G FA VF  L   T +++      ++ FIV       +   PG++I  
Sbjct: 223 WIGNAA----VHGKFATVFARLILPTHDSKGVSDMGVHAFIVPIRDMKTHQTLPGVEIQD 278

Query: 52  IENKTSLRVVQNCDILLEDVFVPDDDRLPGANSFQDLVKALSFSCVI------------- 98
             +K  L  V N  +    V +P D+ L   N F D+ +  +++  +             
Sbjct: 279 CGHKVGLNGVDNGALRFRSVRIPRDNLL---NRFGDVSRDGTYTSSLPTINKRFGATLGE 335

Query: 99  -------VAWISIGIAAGVYDACLRYLGERKQFGAP------LAAFQLNQEKLVRMLGNI 145
                  +A+ S+G+        +RY   R+QFG P      +  +Q  Q KL+ ML + 
Sbjct: 336 LVGGRVGLAYASVGVLKISATIAIRYSLLRQQFGPPKQPEVSILDYQSQQHKLMPMLAST 395

Query: 146 QAMWLLGWRLC-------KLHDSGRMTTGQA-SLG-KAWITKQARETVALGRELLGGNGI 196
            A       L        K HD   +    A S G K+++T    + +++ RE  GG+G 
Sbjct: 396 YAYHFATVYLVEKYSEMKKTHDEQLVADVHALSAGLKSYVTSYTAKALSVCREACGGHGY 455

Query: 197 VTDFHVGKAFCDMESIYTYEGSYEV 221
                 G    D +   T+EG   V
Sbjct: 456 AAVNRFGSLRNDHDIFQTFEGDNTV 480



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,411,734
Number of extensions: 218442
Number of successful extensions: 408
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 3
Length of query: 242
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,474,633
Effective search space: 1237296418
Effective search space used: 1237296418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)