BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0346300 Os06g0346300|Os06g0346300
(304 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G51840.1 | chr3:19225653-19229008 REVERSE LENGTH=437 385 e-107
AT3G45300.1 | chr3:16621659-16624848 REVERSE LENGTH=410 120 9e-28
AT5G65110.1 | chr5:26009821-26012482 REVERSE LENGTH=693 72 4e-13
AT2G35690.1 | chr2:14999962-15002892 FORWARD LENGTH=665 59 3e-09
AT4G16760.1 | chr4:9424930-9428689 REVERSE LENGTH=665 56 2e-08
>AT3G51840.1 | chr3:19225653-19229008 REVERSE LENGTH=437
Length = 436
Score = 385 bits (990), Expect = e-107, Method: Compositional matrix adjust.
Identities = 187/312 (59%), Positives = 234/312 (75%), Gaps = 31/312 (9%)
Query: 1 MVSIAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVPGGWILNGQK 60
M++IA GSEAQKEKYL L+++ V +AL+EP++GSDAS L TTA KV GGW +NGQK
Sbjct: 144 MLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQK 203
Query: 61 RWPANSSFADIFVVLACNTSTNQINGFIVNGGAPGLKISKIDNKMSLRVVQNCDILLEDV 120
RW NS+FAD+ ++ A NT+TNQINGFIV APGLK +KI NK+ LR+VQN DILL++V
Sbjct: 204 RWIGNSTFADLLIIFARNTTTNQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNV 263
Query: 121 FVPDDDRLPGANSFQDLVKIYSISPHTIGDTDLTDYVAYIQALSFSRVIVAWISIGIAAG 180
FVPD+DRLPG NSFQD K+ L+ SRV+VAW IGI+ G
Sbjct: 264 FVPDEDRLPGVNSFQDTSKV----------------------LAVSRVMVAWQPIGISMG 301
Query: 181 VYDACLRYLGERKQFGAPLAAFQLNQEKL---------MWLLGWRLYELHDSGRMTTGQA 231
+YD C RYL ERKQFGAPLAAFQLNQ+KL M+L+GWRL +L+++G+MT GQA
Sbjct: 302 IYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQA 361
Query: 232 SLGKAWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVARD 291
SLGKAWI+ KARET +LGRELLGGNGI+ DF V KAFCD+E +YTYEG+Y++N L+ R+
Sbjct: 362 SLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGRE 421
Query: 292 ITGIASIRPASR 303
+TGIAS +PA+R
Sbjct: 422 VTGIASFKPATR 433
>AT3G45300.1 | chr3:16621659-16624848 REVERSE LENGTH=410
Length = 409
Score = 120 bits (301), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 134/297 (45%), Gaps = 33/297 (11%)
Query: 8 GSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVPGGWILNGQKRWPANSS 67
G+ AQKEKYL L + V A+SEPN GSD + A KV GG+ILNG K W N
Sbjct: 130 GTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGP 189
Query: 68 FADIFVVLA---CNTSTNQINGFIVNGGAPGLKISKIDNKMSLRVVQNCDILLEDVFVPD 124
A+ VV A + I FI+ G G ++ +K+ +R C+++ E+ FVP+
Sbjct: 190 SAETLVVYAKTDTKAGSKGITAFIIEKGMTGFSTAQKLDKLGMRGSDTCELVFENCFVPE 249
Query: 125 DDRLPGANSFQDLVKIYSISPHTIGDTDLTDYVAYIQALSFSRVIVAWISIGIAAGVYDA 184
++ L D + + L R+++A +GI D
Sbjct: 250 ENIL---------------------DKEGKGVYVLMSGLDLERLVLAAGPLGIMQACLDN 288
Query: 185 CLRYLGERKQFGAPLAAFQLNQEKL--MW--LLGWRLYELH-----DSGRMTTGQASLGK 235
L Y+ +R+QFG P+ FQ Q K+ M+ L R Y D+G++ +
Sbjct: 289 VLPYIRQREQFGRPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGTI 348
Query: 236 AWITKKARETVALGRELLGGNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVARDI 292
++A + + LGGNG + ++ G+ D + G+ E+ +++ R++
Sbjct: 349 LCAAERATQVALQAIQCLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRIVIGREL 405
>AT5G65110.1 | chr5:26009821-26012482 REVERSE LENGTH=693
Length = 692
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 143/340 (42%), Gaps = 57/340 (16%)
Query: 3 SIAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVP--GGWIL---- 56
S+ LG++ ++KY + + +A++E +HGS+ L TTA P +++
Sbjct: 157 SVINLGTKKHRDKYFDGIDNLDYTGCFAMTELHHGSNVQGLQTTATFDPLKDEFVIDTPN 216
Query: 57 NGQKRW-----PANSSFADIFVVLACNTSTNQ------INGFIV-------NGGAPGLKI 98
+G +W + FA +F L T ++ ++ FIV + PG++I
Sbjct: 217 DGAIKWWIGNAAVHGKFATVFARLILPTHDSKGVSDMGVHAFIVPIRDMKTHQTLPGVEI 276
Query: 99 SKIDNKMSLRVVQNCDILLEDVFVPDDDRLPGANSFQDLVK--IYSISPHTIGDTDLTDY 156
+K+ L V N + V +P D+ L N F D+ + Y+ S TI +
Sbjct: 277 QDCGHKVGLNGVDNGALRFRSVRIPRDNLL---NRFGDVSRDGTYTSSLPTINKR----F 329
Query: 157 VAYIQALSFSRVIVAWISIGIAAGVYDACLRYLGERKQFGAP------LAAFQLNQEKLM 210
A + L RV +A+ S+G+ +RY R+QFG P + +Q Q KLM
Sbjct: 330 GATLGELVGGRVGLAYASVGVLKISATIAIRYSLLRQQFGPPKQPEVSILDYQSQQHKLM 389
Query: 211 WLLG----------------WRLYELHDSGRMTTGQA-SLG-KAWITKKARETVALGREL 252
+L + + HD + A S G K+++T + +++ RE
Sbjct: 390 PMLASTYAYHFATVYLVEKYSEMKKTHDEQLVADVHALSAGLKSYVTSYTAKALSVCREA 449
Query: 253 LGGNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVARDI 292
GG+G G D + T+EG V VA D+
Sbjct: 450 CGGHGYAAVNRFGSLRNDHDIFQTFEGDNTVLLQQVAADL 489
>AT2G35690.1 | chr2:14999962-15002892 FORWARD LENGTH=665
Length = 664
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 132/336 (39%), Gaps = 56/336 (16%)
Query: 3 SIAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVPGG--WILN--- 57
+I G+E Q++K+L +KMQ + YA +E HGS+ L TTA P +I++
Sbjct: 109 AIKGQGTEQQQQKWLSLATKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDQFIIHSPT 168
Query: 58 --GQKRWPAN----SSFADIFVVLACNTSTNQINGFIV-------NGGAPGLKISKIDNK 104
K WP S+ A I+ L N + ++GFIV + PG+ + I K
Sbjct: 169 QTSSKWWPGGLGKVSTHAVIYARLITNGKDHGVHGFIVQLRSLDDHSPLPGITVGDIGMK 228
Query: 105 MSLRVVQNCD--ILLEDVFVPDDDRLPGANSFQDLVKIYSISPHTIGDTDLTDYVAYIQA 162
+ D L+ D F R+P L K+ + +D+ + Y
Sbjct: 229 FGNGAYNSMDNGFLMFDHF-----RIPRDQMLMRLSKVTREGKYVA--SDVPRQLVYGTM 281
Query: 163 LSFSRVIVAWISIGIAAGVYDACLRYLGERKQFGA--------------------PLA-- 200
+ + IV+ S +A V A RY R+QFG+ PL
Sbjct: 282 VYVRQSIVSNASTALARAVCIAT-RYSAVRRQFGSHDGGIETQVINYKTQQNRLFPLLAS 340
Query: 201 --AFQLNQEKLMWLLG--WRLYELHDSGRMTTGQASLG--KAWITKKARETVALGRELLG 254
AF+ E L WL + E D + A K+ T + + R+L G
Sbjct: 341 AYAFRFVGEWLKWLYTDVTKRLEASDFATLPEAHACTAGLKSMTTSATSDGIEECRKLCG 400
Query: 255 GNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVAR 290
G+G + + + F TYEG V L VAR
Sbjct: 401 GHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVAR 436
>AT4G16760.1 | chr4:9424930-9428689 REVERSE LENGTH=665
Length = 664
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 132/337 (39%), Gaps = 58/337 (17%)
Query: 3 SIAQLGSEAQKEKYLRPLSKMQKVCVYALSEPNHGSDASSLNTTARKVPGG--WILN--- 57
+I G+E Q++K+L +KMQ + YA +E HGS+ L TTA P ++++
Sbjct: 109 AIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHTPT 168
Query: 58 --GQKRWPAN----SSFADIFVVLACNTSTNQINGFIV-------NGGAPGLKISKIDNK 104
K WP S+ A ++ L N I+GFIV + P + + I K
Sbjct: 169 QTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTK 228
Query: 105 M---SLRVVQNCDILLEDVFVPDDDRLPGANSFQDLVKIYSISPHTIGDTDLTDYVAYIQ 161
M + + N ++ + V +P D L L K+ + +D+ + Y
Sbjct: 229 MGNGAYNSMDNGFLMFDHVRIPRDQML------MRLSKVTREGEYV--PSDVPKQLVYGT 280
Query: 162 ALSFSRVIVAWISIGIAAGVYDACLRYLGERKQFGA--------------------PLA- 200
+ + IVA S ++ V A RY R+QFGA PL
Sbjct: 281 MVYVRQTIVADASNALSRAVCIAT-RYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLA 339
Query: 201 ---AFQLNQEKLMWLLGWRLYELHDSGRMTTGQASLGKAWITKKARETVALG----RELL 253
AF+ E L WL L S T +A A + A G R+L
Sbjct: 340 SAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLC 399
Query: 254 GGNGIVTDFHVGKAFCDMESLYTYEGSYEVNALIVAR 290
GG+G + + + F TYEG V L VAR
Sbjct: 400 GGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVAR 436
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,522,448
Number of extensions: 272416
Number of successful extensions: 546
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 536
Number of HSP's successfully gapped: 5
Length of query: 304
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 206
Effective length of database: 8,419,801
Effective search space: 1734479006
Effective search space used: 1734479006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)