BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0328800 Os06g0328800|AK101557
(521 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33570.1 | chr2:14217361-14219043 FORWARD LENGTH=497 590 e-169
AT5G44670.1 | chr5:18019209-18021266 REVERSE LENGTH=520 447 e-126
AT4G20170.1 | chr4:10896810-10898794 FORWARD LENGTH=505 431 e-121
AT5G48190.1 | chr5:19543479-19544169 FORWARD LENGTH=103 106 3e-23
AT3G60990.1 | chr3:22569283-22569973 REVERSE LENGTH=103 106 3e-23
AT3G07380.1 | chr3:2361324-2362014 REVERSE LENGTH=103 103 2e-22
>AT2G33570.1 | chr2:14217361-14219043 FORWARD LENGTH=497
Length = 496
Score = 590 bits (1521), Expect = e-169, Method: Compositional matrix adjust.
Identities = 262/397 (65%), Positives = 324/397 (81%), Gaps = 3/397 (0%)
Query: 121 DPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGA 180
DPNKR +P+G AAALFV MGAYRGGP TF+V+GLASKP HV+ P++KCEW+ N
Sbjct: 96 DPNKRVFQPFGNAAALFVLMGAYRGGPTTFSVIGLASKPIHVYGKPWYKCEWISN---NG 152
Query: 181 PPVRTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVA 240
+R KA K+LPDWGYGRVYTVVVVNCTF SNPN+DN GGKL+++AYY+ + + +ERF
Sbjct: 153 TSIRAKAQKILPDWGYGRVYTVVVVNCTFNSNPNSDNTGGKLILNAYYNESPKLFERFTT 212
Query: 241 LEEAPGSYDDARFRPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLHDAG 300
LEE+ G YD++++ PP+ YDYLYCGSSLYGN+S++RMREW+AYHA FFG +SHFV HDAG
Sbjct: 213 LEESAGIYDESKYSPPYQYDYLYCGSSLYGNVSASRMREWMAYHAWFFGDKSHFVFHDAG 272
Query: 301 GVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDV 360
GV+PEVR VL+PW+ AGRVTVQ+IR Q YDGYYYNQFL+VNDCLHRYR+AANWTFFFDV
Sbjct: 273 GVSPEVRKVLEPWIRAGRVTVQNIRDQSQYDGYYYNQFLIVNDCLHRYRYAANWTFFFDV 332
Query: 361 DEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSI 420
DEYIYLP G LE VL + TQFTIEQNPMSS LCI+D ++DY R+WGFEKL+F++S
Sbjct: 333 DEYIYLPHGNTLESVLDEFSVNTQFTIEQNPMSSVLCINDSSQDYPRQWGFEKLLFKDSR 392
Query: 421 TGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCRKFVP 480
T +RRDRKYAIQA+NA++TGVHMS+N+ G+T HKTE+ IRYYHYHN+I V E CR+ +P
Sbjct: 393 TKIRRDRKYAIQAKNAFATGVHMSENIVGKTLHKTETKIRYYHYHNTITVHEELCREMLP 452
Query: 481 KPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIG 517
A ++ +PYVYDDNMK+L I+ FE++ +G
Sbjct: 453 NSAKKKVTLYNKLPYVYDDNMKKLVKTIKEFEQKKLG 489
>AT5G44670.1 | chr5:18019209-18021266 REVERSE LENGTH=520
Length = 519
Score = 447 bits (1150), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/404 (55%), Positives = 273/404 (67%), Gaps = 15/404 (3%)
Query: 124 KRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAPPV 183
KR YG AA FV M AYRGG TFAV+GL+SKP HV+S+P ++CEW+P +
Sbjct: 115 KRTFTGYGWAAYNFVLMNAYRGGVNTFAVIGLSSKPLHVYSHPTYRCEWIP-LNQSDNRI 173
Query: 184 RTKAYKMLPDWGYGRVYTVVVVNCTFPSNP--NADNLGGKLLVHAYYSTASRRYERFV-A 240
T K+L DWGYGRVYT VVVNCTFPSN N N GG LL+HA R +
Sbjct: 174 LTDGTKILTDWGYGRVYTTVVVNCTFPSNTVINPKNTGGTLLLHATTGDTDRNITDSIPV 233
Query: 241 LEEAPGSYD----DARFRPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVL 296
L E P + D ++ R YDYLYCGSSLYGNLS R+REW+AYH RFFG RSHFVL
Sbjct: 234 LTETPNTVDFALYESNLRRREKYDYLYCGSSLYGNLSPQRIREWIAYHVRFFGERSHFVL 293
Query: 297 HDAGGVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTF 356
HDAGG+T EV VL PW+ GRVTV DIR QE +DGYY+NQF+VVNDCLHRYR A W F
Sbjct: 294 HDAGGITEEVFEVLKPWIELGRVTVHDIREQERFDGYYHNQFMVVNDCLHRYRFMAKWMF 353
Query: 357 FFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCI--DDPTEDYSREWGFEKL 414
FFDVDE+IY+P ++ V+ L+ Y+QFTIEQ PMSS+LC D P Y R+WGFEKL
Sbjct: 354 FFDVDEFIYVPAKSSISSVMVSLEEYSQFTIEQMPMSSQLCYDGDGPARTY-RKWGFEKL 412
Query: 415 VFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEP 474
+R+ RRDRKYA+Q RN ++TGVHMSQ++ G+T H+ E IRY+HYH SI+ EP
Sbjct: 413 AYRDVKKVPRRDRKYAVQPRNVFATGVHMSQHLQGKTYHRAEGKIRYFHYHGSISQRREP 472
Query: 475 CRKFVPKPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGD 518
CR NG++++ E PYV D M+ + ++ FE +TIGD
Sbjct: 473 CRHLY----NGTRIVHENNPYVLDTTMRDIGLAVKTFEIRTIGD 512
>AT4G20170.1 | chr4:10896810-10898794 FORWARD LENGTH=505
Length = 504
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/403 (52%), Positives = 268/403 (66%), Gaps = 14/403 (3%)
Query: 124 KRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAPPV 183
KR YG+AA FV M AYRGG +FAV+GL+SKP HV+ +P ++CEW+ P P+
Sbjct: 101 KRTFTGYGSAAYNFVSMSAYRGGVNSFAVIGLSSKPLHVYGHPSYRCEWVSLDPT-QDPI 159
Query: 184 RTKAYKMLPDWGYGRVYTVVVVNCTFPSNP--NADNLGGKLLVHAYYSTASRRY-ERFVA 240
T +K+L DWGYGR+YT VVVNCTF S N N GG L++HA + +
Sbjct: 160 STTGFKILTDWGYGRIYTTVVVNCTFSSISAVNPQNSGGTLILHATTGDPTLNLTDSISV 219
Query: 241 LEEAPGSYDDARF---RPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLH 297
L E P S D + + YDYLYCGSSLYGNLS R+REW+AYH RFFG RSHFVLH
Sbjct: 220 LTEPPKSVDFDLYNSTKKTKKYDYLYCGSSLYGNLSPQRVREWIAYHVRFFGERSHFVLH 279
Query: 298 DAGGVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFF 357
DAGG+ EV VL PW+ GRVT+ DIR QE +DGYY+NQF++VNDCLHRYR W FF
Sbjct: 280 DAGGIHEEVFEVLKPWIELGRVTLHDIRDQERFDGYYHNQFMIVNDCLHRYRFMTKWMFF 339
Query: 358 FDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCI--DDPTEDYSREWGFEKLV 415
FDVDE++++P + V+ L+ Y+QFTIEQ PMSS++C D P Y R+WG EKL
Sbjct: 340 FDVDEFLHVPVKETISSVMESLEEYSQFTIEQMPMSSRICYSGDGPARTY-RKWGIEKLA 398
Query: 416 FRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPC 475
+R+ RRDRKYA+Q N ++TGVHMSQN+ G+T HK ES IRY+HYH SI+ EPC
Sbjct: 399 YRDVKKVPRRDRKYAVQPENVFATGVHMSQNLQGKTYHKAESKIRYFHYHGSISQRREPC 458
Query: 476 RKFVPKPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGD 518
R+ N S+V+FE PYV D + + +R FE +TIGD
Sbjct: 459 RQLF----NDSRVVFENTPYVLDTTICDVGLAVRTFELRTIGD 497
>AT5G48190.1 | chr5:19543479-19544169 FORWARD LENGTH=103
Length = 102
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 352 ANWTFFFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCI--DDPTEDYSREW 409
W FFFDVDE++++P + V+ L+ Y QFTIE PMSS++C D P Y R+W
Sbjct: 2 TKWMFFFDVDEFLHVPVKETISSVMESLEEYFQFTIELMPMSSRVCYSGDGPARTY-RKW 60
Query: 410 GFEKLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRT 451
G EKL +R+ RRDRKYA+Q N ++ GVHMSQN+ G+T
Sbjct: 61 GIEKLAYRDVKKVPRRDRKYAVQPENVFAIGVHMSQNLQGKT 102
>AT3G60990.1 | chr3:22569283-22569973 REVERSE LENGTH=103
Length = 102
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 67/102 (65%), Gaps = 3/102 (2%)
Query: 352 ANWTFFFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCI--DDPTEDYSREW 409
W FFFDVDE++++P + V+ L+ Y QFTIE PMSS++C D P Y R+W
Sbjct: 2 TKWMFFFDVDEFLHVPVKETISSVMESLEEYFQFTIELMPMSSRVCYSGDGPARTY-RKW 60
Query: 410 GFEKLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRT 451
G EKL +R+ RRDRKYA+Q N ++ GVHMSQN+ G+T
Sbjct: 61 GIEKLAYRDVKKVPRRDRKYAVQPENVFAIGVHMSQNLQGKT 102
>AT3G07380.1 | chr3:2361324-2362014 REVERSE LENGTH=103
Length = 102
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Query: 352 ANWTFFFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCI--DDPTEDYSREW 409
W FF DVDE++++P + V+ L+ Y QFTIE PMSS++C D P Y R+W
Sbjct: 2 TKWMFFVDVDEFLHVPVKETISSVMESLEEYFQFTIELMPMSSQVCYSGDGPARTY-RKW 60
Query: 410 GFEKLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRT 451
G EKL +R+ RRDRKYA+Q N ++ GVHMSQN+ G+T
Sbjct: 61 GIEKLAYRDVKKVPRRDRKYAVQPENVFAIGVHMSQNLQGKT 102
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,628,506
Number of extensions: 441044
Number of successful extensions: 720
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 6
Length of query: 521
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,282,721
Effective search space: 3462177378
Effective search space used: 3462177378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)