BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0326700 Os06g0326700|AK101908
         (340 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G51520.1  | chr3:19110739-19112518 FORWARD LENGTH=315          405   e-113

>AT3G51520.1 | chr3:19110739-19112518 FORWARD LENGTH=315
          Length = 314

 Score =  405 bits (1042), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/314 (59%), Positives = 241/314 (76%), Gaps = 2/314 (0%)

Query: 28  GGATVFRGADYSLP-RTTVALALWLGGIHFNVFLVLASLFLFPLRVAAMVVAFQLLFMLI 86
           GG+  FR  ++S    + +A+A+WLG IHFNV LVL SL   P  ++ MV+    LF+ I
Sbjct: 2   GGSREFRAEEHSNQFHSIIAMAIWLGAIHFNVALVLCSLIFLPPSLSLMVLGLLSLFIFI 61

Query: 87  PLNDKDKLGRKIARFICRYAMGYFPISLHVEDYKCFDPNRAYVFGFEPHSVLPIGVAALA 146
           P++ + K GRK+AR+IC++A  YFP+SL+VEDY+ F PNRAYVFG+EPHSVLPIGV AL 
Sbjct: 62  PIDHRSKYGRKLARYICKHACNYFPVSLYVEDYEAFQPNRAYVFGYEPHSVLPIGVVALC 121

Query: 147 DLVGFMPLPKIKVLASSAVFYTPFLRQIWTWLGLIPATRKNFQSYLGAGYSCIIVPGGVQ 206
           DL GFMP+P IKVLASSA+FYTPFLR IWTWLGL  A+RKNF S L +GYSC++VPGGVQ
Sbjct: 122 DLTGFMPIPNIKVLASSAIFYTPFLRHIWTWLGLTAASRKNFTSLLDSGYSCVLVPGGVQ 181

Query: 207 EILHMDHDSEIAFLKSRKGFVKIAMQSGCPLVPVFCFGQSYAYKWWRPKGKLFVKIARAI 266
           E  HM HD+E  FL  R+GFV+IAM+ G PLVPVFCFGQ+  YKWW+P   L++K++RAI
Sbjct: 182 ETFHMQHDAENVFLSRRRGFVRIAMEQGSPLVPVFCFGQARVYKWWKPDCDLYLKLSRAI 241

Query: 267 KFTPIVFWGRYGTPIPFPTPMHVVVGRPIEVEKNSQPTIDEINEVHEQFTVALQDLFDKY 326
           +FTPI FWG +G+P+P   PMHVVVG+PIEV K  +PT +EI + H Q+  AL+DLF+++
Sbjct: 242 RFTPICFWGVFGSPLPCRQPMHVVVGKPIEVTKTLKPTDEEIAKFHGQYVEALRDLFERH 301

Query: 327 KTETGYPGLHLRVL 340
           K+  GY  L L++L
Sbjct: 302 KSRVGY-DLELKIL 314



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.145    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,189,602
Number of extensions: 311352
Number of successful extensions: 830
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 241
Effective length of database: 8,392,385
Effective search space: 2022564785
Effective search space used: 2022564785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)