BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0320100 Os06g0320100|AK067233
         (558 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G06830.1  | chr5:2116882-2119559 REVERSE LENGTH=550            558   e-159

>AT5G06830.1 | chr5:2116882-2119559 REVERSE LENGTH=550
          Length = 549

 Score =  558 bits (1439), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/565 (52%), Positives = 376/565 (66%), Gaps = 28/565 (4%)

Query: 1   MHDQAEICSLPIDIAFGRLQEWLVDRKRVPQDWXXXXXXXXXXXXXXXXXXXXDLDPSLL 60
           M  Q ++ +LPIDI F RL EWLVDRKR+P DW                    ++DP   
Sbjct: 1   MPSQDDVQNLPIDITFSRLGEWLVDRKRIPADWRKRVAVIRVKILKEFSSLPKEIDPFFQ 60

Query: 61  ALEPDEIGYLEAKKIYGILLESNPESRNIFGRLTGSAGEWEAIVKAYEKDHVFLGEAAQI 120
            L+P+ IGYLE KK+Y ILL++ PESRNIFGRL+G++G WEAIV+A+EKDH++LGEAAQI
Sbjct: 61  TLDPEVIGYLEVKKVYEILLKTTPESRNIFGRLSGASGVWEAIVRAFEKDHIYLGEAAQI 120

Query: 121 MVQNVNYDIPYXXXXXXXXXXXLAELDRREADIKRLAALSATRYAEACQELGLQGINVRQ 180
           ++QNVNY+IPY           + ELDR+EADIKR  ALSAT+Y +AC+ELGLQG NVR+
Sbjct: 121 IIQNVNYEIPYLKKQVQKVQQQMTELDRKEADIKRSVALSATKYEDACRELGLQGNNVRR 180

Query: 181 ELIESAKTLPSTFTKILEVLNSDPVSIATEYYTTFVRECHTEDKENCKSVLQNLKQLQAN 240
           EL+E+A +LPSTF+KILEV+NSD V+ A EYY+ +V++ HTE  +  + VLQNLK ++ N
Sbjct: 181 ELLETASSLPSTFSKILEVINSDSVTGAMEYYSAYVQDVHTEKDKPLRIVLQNLKYIREN 240

Query: 241 PPSLHISVCNEVESSLGETSKALESNVTGAEXXXXXXXXXXXXX-XXXXXXXGIDWDIGA 299
           PPSL +          G++      N+  +E                      IDWD+  
Sbjct: 241 PPSLSV---------FGDSEGLDADNIQSSENANGTDAAADSIDWDITVETPEIDWDVSM 291

Query: 300 VEQPVEESGNGFGSYEIIDANVELAGSENYNFGIXXXXXXXXXXXXEPGICWDITDVNPE 359
           VE+   +SGN  GSYEI++A+      EN  F +               I WD++   P+
Sbjct: 292 VEEV--DSGNDLGSYEIVNAS---DIPENSPFKVEESQGLEVDVSE---ISWDVSVETPQ 343

Query: 360 ----------ENASIQNAPESGQSQSLAEERSQLLEKEYRNNILDDLLEVRAFLTQRLGE 409
                     E+   Q    + Q      ERSQLLE EYRN ILDDL EV+AFL QRL E
Sbjct: 344 VEEIGDSALLESNQTQLTDSTTQVLGSGGERSQLLETEYRNKILDDLYEVKAFLNQRLIE 403

Query: 410 MRNADTSSLQHQVQAVSPFVLQQYAPENLENMLAEVSSAISLLSNQKTLDLIMILNSKRF 469
           +RN DT SLQH VQAVSP VLQQY+PE +E M+ ++S AISLL+N+K+ DLIMILNSKRF
Sbjct: 404 LRNEDTLSLQHHVQAVSPMVLQQYSPETIEPMVVDISMAISLLTNKKSRDLIMILNSKRF 463

Query: 470 LDRLVSTLEDKKHHEVKLREGLGDLSVKRMELQNALSSSWPKQEAAITKTRELKKLCETT 529
           LDRLVS LE+KKH EVKLRE L D+  +RMELQN+LS+ WPKQEAA++KTRELK+LCET+
Sbjct: 464 LDRLVSELEEKKHREVKLRESLKDVGRRRMELQNSLSAIWPKQEAALSKTRELKELCETS 523

Query: 530 LSTVFDGRPVHIIGEINTLLSSSVS 554
           LS++FDGRPV+I GEINTLL++ VS
Sbjct: 524 LSSMFDGRPVNIRGEINTLLNAGVS 548



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,842,738
Number of extensions: 347403
Number of successful extensions: 922
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 454
Effective length of database: 8,255,305
Effective search space: 3747908470
Effective search space used: 3747908470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)