BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0318300 Os06g0318300|AK065671
         (270 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G07880.1  | chr3:2514175-2515544 FORWARD LENGTH=241            253   6e-68
AT1G62450.1  | chr1:23115958-23117370 REVERSE LENGTH=224          223   8e-59
AT1G12070.1  | chr1:4078913-4080106 REVERSE LENGTH=224            216   1e-56

>AT3G07880.1 | chr3:2514175-2515544 FORWARD LENGTH=241
          Length = 240

 Score =  253 bits (647), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 145/179 (81%), Gaps = 1/179 (0%)

Query: 90  IDLGPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCILSPGRPD 149
           + LGP+ +IKE LE DK+DESLR+WKEQLLGSVD+ ++GE+L+P+VRI SL I+SPGRPD
Sbjct: 62  LQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPGRPD 121

Query: 150 VLLPLPVEPSNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEM 209
           ++L +P E  N K  WFTLKEGS Y LKFTF V++NIVSGLRYTNTVWK G++VD+ KEM
Sbjct: 122 IVLLVP-ENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAKEM 180

Query: 210 LGTFSPQLXXXXXXXXXXXXXSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDWPC 268
           LGTFSPQL             SG+FARGSYSA+TKF+DDD KCYLEINY+FDIR++WP 
Sbjct: 181 LGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTKFLDDDNKCYLEINYSFDIRKEWPA 239



>AT1G62450.1 | chr1:23115958-23117370 REVERSE LENGTH=224
          Length = 223

 Score =  223 bits (568), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 130/175 (74%), Gaps = 1/175 (0%)

Query: 93  GPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCILSPGRPDVLL 152
           GP +++KEQLE DK+DESLRRWKEQLLG VDL  VGE+ +P V+I  L I SP R +++L
Sbjct: 48  GPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREEMVL 107

Query: 153 PLPVEP-SNSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLG 211
            +P +   N K PWFT+KEGS Y L F F V++NIVSGLRY NTVWK G++VD TK MLG
Sbjct: 108 TIPEDGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLG 167

Query: 212 TFSPQLXXXXXXXXXXXXXSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDW 266
           TFSPQ              SG+FARGSYSA+TKF+DDD KCYLEINYTFDIR+ W
Sbjct: 168 TFSPQAESYQHVMPEEMTPSGMFARGSYSARTKFIDDDNKCYLEINYTFDIRKSW 222



>AT1G12070.1 | chr1:4078913-4080106 REVERSE LENGTH=224
          Length = 223

 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/175 (61%), Positives = 129/175 (73%), Gaps = 1/175 (0%)

Query: 93  GPRVSIKEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPDVRITSLCILSPGRPDVLL 152
           GP +++KEQLE DK+DESLRRWKEQLLGSVDL  VGE+ +P V+I +L I SP R D++L
Sbjct: 48  GPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKILTLTIRSPDREDMVL 107

Query: 153 PLPVEPS-NSKEPWFTLKEGSTYRLKFTFSVSSNIVSGLRYTNTVWKAGIRVDKTKEMLG 211
            +P      SK PWFTLKEGS Y L FTF V++NIVSGL+Y+NTVWK GI+V   KEMLG
Sbjct: 108 TIPENGKPASKGPWFTLKEGSKYTLIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLG 167

Query: 212 TFSPQLXXXXXXXXXXXXXSGVFARGSYSAKTKFVDDDRKCYLEINYTFDIRRDW 266
           TFSPQ              SG+  RGSYS K+KFVDDD +CYLE NYTFDIR++W
Sbjct: 168 TFSPQAEPYTHVMFEETAPSGLLVRGSYSVKSKFVDDDNQCYLENNYTFDIRKNW 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,343,023
Number of extensions: 152863
Number of successful extensions: 320
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 173
Effective length of database: 8,447,217
Effective search space: 1461368541
Effective search space used: 1461368541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)