BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0309200 Os06g0309200|AK103132
         (355 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G04970.1  | chr1:1411216-1413431 FORWARD LENGTH=489            332   2e-91
AT3G20270.1  | chr3:7067779-7070866 FORWARD LENGTH=723            248   3e-66

>AT1G04970.1 | chr1:1411216-1413431 FORWARD LENGTH=489
          Length = 488

 Score =  332 bits (851), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 161/343 (46%), Positives = 237/343 (69%), Gaps = 2/343 (0%)

Query: 1   MEVGITMQIKNYNGSLSLSVLQCGCNVKDLVISLDGGASWFYQGLINAFEDHIRAAVEKA 60
           ME+G+++ +K+  G L LS+ +CGC+V+D+ I L+GGASWFYQG++NAF+D I ++VE  
Sbjct: 140 MEIGLSLGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVEST 199

Query: 61  IPENIIDGTSKLDSLLQSLPRSVNLDNISALNMTFVNDPQYGNSSIEFDINGLFSSA-TA 119
           I + + +G S LDS LQSLP+ + +D+ + LN+TF +DP   NSSI F+I+GLF+   T 
Sbjct: 200 IAKKLTEGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETN 259

Query: 120 KLSNSQKHPQLSLS-CGGASKMLLLSLDEAVFNSALEVYFKAGSMHWVVDKIPDQSLLNT 178
           ++  S     +SL  C G SKML +S+DEAVFNSA  +Y+ A  + WVVDKIP+QSLLNT
Sbjct: 260 QVLKSFFKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNT 319

Query: 179 ASWKFIIPRLYWSYPNDDMLLNISMASPPVMRITSEKIGATIYADMIIDVLHDKETIPXX 238
           A W+FIIP+LY  YPN DM LNIS++SPP+++I+ + +GA + AD++I+VL   + IP  
Sbjct: 320 ARWRFIIPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVA 379

Query: 239 XXXXXXXXXXXXXXXGNKVYGKVELGNFSLALKWSKIGNFHMSLIQGVIRVFLNTVCMPY 298
                          GN + G V L +FS++LKWS IGN H+ L+Q ++   + TV +PY
Sbjct: 380 CISLMIRGSGALRVMGNNLGGSVSLEDFSMSLKWSNIGNLHLHLLQPIVWTVIQTVFVPY 439

Query: 299 LNSRLGHGVILPVVHGFTLKDIYVLTSPEKLTLCSDVAFANAS 341
            N  L  G  LP++HGFTL++  ++ S  ++T+CSDVA+ ++S
Sbjct: 440 ANDHLEKGFPLPIMHGFTLQNAEIICSESEITVCSDVAYLDSS 482



>AT3G20270.1 | chr3:7067779-7070866 FORWARD LENGTH=723
          Length = 722

 Score =  248 bits (634), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 128/338 (37%), Positives = 197/338 (58%), Gaps = 5/338 (1%)

Query: 1   MEVGITMQIKNYNGSLSLSVLQCGCNVKDLVISLDGGASWFYQGLINAFEDHIRAAVEKA 60
           M V IT  + N NGSL ++  +  C VK++ I ++GGASW YQG+++AF+  I + VEK 
Sbjct: 383 MNVRITATLVNDNGSLKIASRENDCTVKNIDIHINGGASWLYQGVVDAFQKMIISTVEKT 442

Query: 61  IPENIIDGTSKLDSLLQSLPRSVNLDNISALNMTFVNDPQYGNSSIEFDINGLF--SSAT 118
           +   I++   KLDS LQSLP+   +D+ +A+N+TF  +P  GNSS+E DINGLF      
Sbjct: 443 VSTKIVEKMKKLDSFLQSLPKQRKIDDSAAVNLTFTGNPVLGNSSVEVDINGLFMPKGDD 502

Query: 119 AKLSNSQKHPQLSLSCGGASKMLLLSLDEAVFNSALEVYFKAGSMHWVVDKIPDQSLLNT 178
            K++ S+     S   G   +M+ +S++E VFNSA  VYF A  MH V+++  + S+L+T
Sbjct: 503 IKVAGSRSS---SFFGGVNKRMVTISVEEGVFNSATLVYFNAKVMHLVMEETKNGSILST 559

Query: 179 ASWKFIIPRLYWSYPNDDMLLNISMASPPVMRITSEKIGATIYADMIIDVLHDKETIPXX 238
           + WK I+P LY  YP++ M+LN+S+ SPP ++IT   I ATI  D+  DV    E +   
Sbjct: 560 SDWKLILPELYKHYPDNKMVLNMSVTSPPAVKITENGIDATIQLDIAFDVQDSGENLSVA 619

Query: 239 XXXXXXXXXXXXXXXGNKVYGKVELGNFSLALKWSKIGNFHMSLIQGVIRVFLNTVCMPY 298
                           N + G + L +F+  +KWSKIG F  + +Q      L  + +PY
Sbjct: 620 RLSTILSVACSTEIVKNNLIGSLRLNDFNATMKWSKIGEFQTNYVQAATSRILEALFLPY 679

Query: 299 LNSRLGHGVILPVVHGFTLKDIYVLTSPEKLTLCSDVA 336
           +N+RL  G  LP+   FT+K+I ++     + +C+D+ 
Sbjct: 680 VNTRLKRGFPLPIPGDFTIKNIKIVYVNSGILVCTDIG 717



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,078,033
Number of extensions: 272684
Number of successful extensions: 763
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 760
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,364,969
Effective search space: 2133067095
Effective search space used: 2133067095
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)