BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0297700 Os06g0297700|Os06g0297700
(648 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55960.1 | chr5:22662726-22664762 FORWARD LENGTH=649 473 e-133
>AT5G55960.1 | chr5:22662726-22664762 FORWARD LENGTH=649
Length = 648
Score = 473 bits (1217), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/433 (53%), Positives = 309/433 (71%), Gaps = 3/433 (0%)
Query: 213 SFLSRAASSRIAGRTPSSRCLFLTGGILRHLKTLVAVGLMLGMILGFLSGSVFFSYKIGL 272
S LS +S R S + T GI+ L T+VA+GL++ MI+G L+G +FFSYKIG+
Sbjct: 217 SSLSAVSSLRSNSFRRSHFTAYFTRGIMTRLNTIVAIGLIVLMIVGSLTGVIFFSYKIGV 276
Query: 273 EGKDAVMSLKSHVENGNYSEKIGLKKWLDDNDIPGLVDQYSAKLYDTVWEQIDQLAVQYN 332
EGKDAV SLKSHVE NY+EKIG+K+W+D+ND+PG+VD Y+ K Y+TV EQID LA+QYN
Sbjct: 277 EGKDAVYSLKSHVEESNYAEKIGIKQWMDENDVPGMVDMYTTKFYETVSEQIDSLAMQYN 336
Query: 333 LTDFTSGFRHFLISQSVDPSGAKGKELITSGPHPYSMKLQVIAKHVKNREWMDIYRELDS 392
+T+ +G +HF+I + S LIT P PY+ KL + VKNREW IY E+D
Sbjct: 337 MTELVTGIKHFVIGHPQNTS-TPSTALIT--PSPYTEKLMSLRTRVKNREWSQIYSEVDV 393
Query: 393 FFRELLITREDLVVKAKGLALQGAEIAKXXXXXXXXXXXXXANLMLSITLHIVSGAAEVL 452
FREL+ITREDLV KAKG A++G ++++ A + SI I+SGAAE
Sbjct: 394 IFRELIITREDLVEKAKGFAVKGMDVSQRVFSSSASVVGGGAKFVFSIGNLIISGAAEFF 453
Query: 453 NFVSQLMVFLWVLYYLITVEGGGATEQVIDLLPLSKQVKDRCVEVIDHAISSVLLATAKI 512
NF+SQLM+F+WVLY LIT E GG TEQV+++LP++ ++RCVEV+D AIS VLLATA+I
Sbjct: 454 NFISQLMIFIWVLYILITSESGGVTEQVMNMLPINASARNRCVEVLDLAISGVLLATAEI 513
Query: 513 AIFQGCLTWLLFKLFKVHFVYTSTVFXXXXXXXXXXXXXXXXXFAAGQLLMEGRYVLAIV 572
A FQGCLTWLLF+L+ +HF+Y STV AA QL++EGRY++A++
Sbjct: 514 AFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYWFATIPAALQLVLEGRYIVAVI 573
Query: 573 VTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEGAILGPLIMTVVMALK 632
++V HL++M+YG + IQ+DIPG N YLTGLSIIGG+ LFP+ALEGAI+GPLI TVV+ALK
Sbjct: 574 LSVTHLVLMEYGASEIQDDIPGSNAYLTGLSIIGGVTLFPSALEGAIMGPLITTVVIALK 633
Query: 633 NLYTEFVLADSEE 645
+LY EFVL + ++
Sbjct: 634 DLYAEFVLNEPKK 646
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 65/116 (56%)
Query: 9 PNGGACKDGEVMDLPWSEMFRSASLRLPKQEEXXXXXXXXXXXXASAAEEDIGGLSLEPD 68
P K +L W EMFRSAS R P+ + +++
Sbjct: 5 PYDSETKSSIPTNLAWQEMFRSASSRKPQDPPSSSSSSPPRKPSGDGSSSKTSLSTVDSQ 64
Query: 69 ARLALYIAMAHAGLATALLVVYGLYRLLADFLRPLQWALLCSIPLRETQRALVAFW 124
ARLA+YIAMAHAGLA A+ V+Y + +LL ++LRP+QWA+LCSIPLR Q LV FW
Sbjct: 65 ARLAMYIAMAHAGLAFAICVLYFVGKLLQEYLRPIQWAILCSIPLRGIQETLVDFW 120
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.138 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,531,883
Number of extensions: 375401
Number of successful extensions: 944
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 941
Number of HSP's successfully gapped: 2
Length of query: 648
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 543
Effective length of database: 8,227,889
Effective search space: 4467743727
Effective search space used: 4467743727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)