BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0297600 Os06g0297600|AK067425
         (95 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55950.1  | chr5:22658411-22660253 REVERSE LENGTH=399           86   4e-18
AT5G57100.1  | chr5:23106563-23108440 REVERSE LENGTH=391           64   1e-11

>AT5G55950.1 | chr5:22658411-22660253 REVERSE LENGTH=399
          Length = 398

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 55/86 (63%), Gaps = 7/86 (8%)

Query: 3   ATSALAHVVLGQFKTIVIMLSSYLVFNSDPGFTSLCGAIIALGGMSVYTYLGLKESASGG 62
           ATSA +HVVLGQFKT VI+L  Y++F SDPGF S+CGAI ALGGMSVYT+L L      G
Sbjct: 292 ATSATSHVVLGQFKTCVILLGGYVIFGSDPGFISICGAIAALGGMSVYTWLNLP-----G 346

Query: 63  KRAPSTSRQNSHLLKSKVIVDGEKPE 88
           K     S  N  L K  V V   K E
Sbjct: 347 KSIDHMS--NKQLPKQNVTVSKPKAE 370



>AT5G57100.1 | chr5:23106563-23108440 REVERSE LENGTH=391
          Length = 390

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%)

Query: 3   ATSALAHVVLGQFKTIVIMLSSYLVFNSDPGFTSLCGAIIALGGMSVYTYLGLK 56
           ATSA+ HVVLGQFKT V++L +Y +F S+ GF S+ GA +A+ G S+YTYL  +
Sbjct: 299 ATSAITHVVLGQFKTCVLLLGNYYIFGSNSGFISVGGAFVAIMGTSLYTYLNTR 352



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,975,605
Number of extensions: 70099
Number of successful extensions: 170
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 2
Length of query: 95
Length of database: 11,106,569
Length adjustment: 65
Effective length of query: 30
Effective length of database: 9,324,529
Effective search space: 279735870
Effective search space used: 279735870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 105 (45.1 bits)