BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0295000 Os06g0295000|J053099H09
         (526 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11000.1  | chr4:6731020-6732464 FORWARD LENGTH=407             58   1e-08
AT5G50140.1  | chr5:20395856-20398197 FORWARD LENGTH=536           50   2e-06

>AT4G11000.1 | chr4:6731020-6732464 FORWARD LENGTH=407
          Length = 406

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 17/134 (12%)

Query: 350 RKNLMLLGILAASVTYQAGLHPPGGVWQSNDDA--GHAAGDPVLHDKQKLRYHAFFYS-- 405
           R  ++++ IL  + TYQAGL PPGG WQ  +D   GH AG   +        +AFF+   
Sbjct: 251 RNAILVVAILIVTATYQAGLSPPGGFWQDTNDGRYGHMAGQMTMP-----FIYAFFFIGL 305

Query: 406 NSISFMASIIVIILLLPESLKLNVNEWLLKAMNTTVVLDMIGLLVAYGTGSSRDWDTSGY 465
           N  +F++S+ VII+     + + + +W  K +  +V    I  L +Y T     +D + Y
Sbjct: 306 NGFAFVSSLYVIII-----ITIGLPKW--KLLYGSVAALSIAALASYSTIFPSSYDANSY 358

Query: 466 VIAMAIFVLGYISI 479
            +++  F+  YISI
Sbjct: 359 -LSVLTFLCAYISI 371




 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 194 AILCATITYQAGLTPPSGCWQD-DDKQHGYHAGHPVLFSNHPRRYKAFFY-CNTTSFMSS 251
           AIL  T TYQAGL+PP G WQD +D ++G+ AG   +    P  Y  FF   N  +F+SS
Sbjct: 258 AILIVTATYQAGLSPPGGFWQDTNDGRYGHMAGQMTM----PFIYAFFFIGLNGFAFVSS 313

Query: 252 IALIILL 258
           + +II++
Sbjct: 314 LYVIIII 320



>AT5G50140.1 | chr5:20395856-20398197 FORWARD LENGTH=536
          Length = 535

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 13/103 (12%)

Query: 320 HQKSQGTQNRRTNEAEVPNTNDIKRKQYTKRKNLMLLGILAASVTYQAGLHPPGGVWQSN 379
           H    G +  R  E E+ +           R  + ++ +L ASVT+  GL+PPGGV+Q  
Sbjct: 339 HGIRHGLRESRIKEKEMQS-----EALQNARNTITVVAVLIASVTFTCGLNPPGGVYQDG 393

Query: 380 DDAGHA-AGDPVLHDKQKLRYHAFFYSNSISFMASIIVIILLL 421
              G A AG  V        +  F  SNSI+   S+ ++ILLL
Sbjct: 394 HFIGKATAGGTV-------AFKVFSVSNSIALFTSLCIVILLL 429



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,120,691
Number of extensions: 368572
Number of successful extensions: 840
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 843
Number of HSP's successfully gapped: 3
Length of query: 526
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 423
Effective length of database: 8,282,721
Effective search space: 3503590983
Effective search space used: 3503590983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)