BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0294200 Os06g0294200|AK119403
         (844 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11000.1  | chr4:6731020-6732464 FORWARD LENGTH=407             56   9e-08
AT5G51160.1  | chr5:20792280-20793681 FORWARD LENGTH=443           52   2e-06

>AT4G11000.1 | chr4:6731020-6732464 FORWARD LENGTH=407
          Length = 406

 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 8/67 (11%)

Query: 506 AILSATITYQAGLTPPSGFWQDDSD---GHRAGEPVLFSNNPYRFKAFFY-CNTTSFMSS 561
           AIL  T TYQAGL+PP GFWQD +D   GH AG+  +    P+ +  FF   N  +F+SS
Sbjct: 258 AILIVTATYQAGLSPPGGFWQDTNDGRYGHMAGQMTM----PFIYAFFFIGLNGFAFVSS 313

Query: 562 IALIILL 568
           + +II++
Sbjct: 314 LYVIIII 320




 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 8/75 (10%)

Query: 661 RKYLMLLGILAASVTYQAGLHPPGGVWQSDDDGA-GHAAGNPVLXXXXXXXXXAFFYS-- 717
           R  ++++ IL  + TYQAGL PPGG WQ  +DG  GH AG   +         AFF+   
Sbjct: 251 RNAILVVAILIVTATYQAGLSPPGGFWQDTNDGRYGHMAGQMTM-----PFIYAFFFIGL 305

Query: 718 NSTSFMASVVVIVLL 732
           N  +F++S+ VI+++
Sbjct: 306 NGFAFVSSLYVIIII 320



>AT5G51160.1 | chr5:20792280-20793681 FORWARD LENGTH=443
          Length = 442

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 21/118 (17%)

Query: 506 AILSATITYQAGLTPPSGFWQDDS----------------DGHRAGEPVLFSNNPYRFKA 549
           A L AT T+QA LTPP G WQD S                  H AG+ ++ + N   F  
Sbjct: 278 ASLVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAGQSIMGTFNGVAFTL 337

Query: 550 FFYCNTTSFMSSIALIILLVNPNLYRPAIQSYALSVCMVAGMFGLMGAYAAGSSQHMR 607
           F + NT  F  S++++ +L    L  P    + L +CM+A  F      A+ +  H++
Sbjct: 338 FVFFNTIGFSVSLSMLNIL---TLGFPL--RFQLQICMIAMYFSHNTTMASIAPDHVK 390



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,830,563
Number of extensions: 514146
Number of successful extensions: 1052
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 3
Length of query: 844
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 737
Effective length of database: 8,173,057
Effective search space: 6023543009
Effective search space used: 6023543009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 116 (49.3 bits)