BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0293100 Os06g0293100|Os06g0293100
         (579 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11000.1  | chr4:6731020-6732464 FORWARD LENGTH=407             52   8e-07

>AT4G11000.1 | chr4:6731020-6732464 FORWARD LENGTH=407
          Length = 406

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 215 RKFLLQLAILAATVTYKTGLNPPGGFWSGSDDGRAGDPVLVDHYRNRYMVFFY-CNATGF 273
           R  +L +AIL  T TY+ GL+PPGGFW  ++DGR G           Y  FF   N   F
Sbjct: 251 RNAILVVAILIVTATYQAGLSPPGGFWQDTNDGRYGHMAGQMTMPFIYAFFFIGLNGFAF 310

Query: 274 MASVAVILML 283
           ++S+ VI+++
Sbjct: 311 VSSLYVIIII 320




 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 3/56 (5%)

Query: 56  TYDAGLNPPGGFWPD--GGRAGELILLDTHPRRYKAFF-HCNTAAFVASLVVIVIV 108
           TY AGL+PPGGFW D   GR G +    T P  Y  FF   N  AFV+SL VI+I+
Sbjct: 265 TYQAGLSPPGGFWQDTNDGRYGHMAGQMTMPFIYAFFFIGLNGFAFVSSLYVIIII 320



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,986,318
Number of extensions: 344662
Number of successful extensions: 806
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 2
Length of query: 579
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 475
Effective length of database: 8,255,305
Effective search space: 3921269875
Effective search space used: 3921269875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)