BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0281800 Os06g0281800|AK064437
(350 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393 125 5e-29
AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627 97 9e-21
AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625 95 5e-20
AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623 91 1e-18
AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281 88 5e-18
>AT5G25610.1 | chr5:8914498-8916684 REVERSE LENGTH=393
Length = 392
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 15/228 (6%)
Query: 109 ANLHFLEDALKPGSIITPYIT---GIATRAPFLRRDIADSIPVSTKNFADILAMFS-PIS 164
A L FLE L G + G + FL R A+++P ++ F++ L FS
Sbjct: 173 AALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAG 232
Query: 165 LVMADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIM 224
A+ ++ ++ CE R + GEE+ CATS+ES+V+F++S LG +RA S +V +
Sbjct: 233 SEEAEMMKKTIEECEA-RKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKN-A 290
Query: 225 PGNMYKVVAVRTVAGLRGDTVTCHTMRFPFAVFYCHAINPTRVYAVVLXXXXXXXXXXXX 284
P YK+ A +V CH ++PFAVFYCH T VYAV L
Sbjct: 291 PMQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAMMTTVYAVPLEGENGM------ 344
Query: 285 TPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIW 332
+ +A+AVCH +TS ++P F ++PG VCHF+ V+W
Sbjct: 345 ---RAKAVAVCHKNTSAWNPNHLAFKVLKVKPGTVPVCHFLPETHVVW 389
>AT1G70370.1 | chr1:26513003-26514998 REVERSE LENGTH=627
Length = 626
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 113 FLEDALKPGSII-TPYITGIATRAPFLRRDIADSIPVSTKNFADILAMFSPI-SLVMADG 170
F E +LK G++I P I + FL R I +P ST +I +F + + M
Sbjct: 412 FRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGGI 471
Query: 171 IQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMYK 230
I A+ CE P GE + C S E +++FA SVLG + + +V G+ K
Sbjct: 472 ITDAVTECERP-PSVGETKRCVGSAEDMIDFATSVLGRSVVLRTTENV------AGSKEK 524
Query: 231 VVAVRTVAGLRG----DTVTCHTMRFPFAVFYCHAINPTRVYAVVLXXXXXXXXXXXXTP 286
VV + V G+ G V+CH +P+ ++YCH++ RVY L +
Sbjct: 525 VV-IGKVNGINGGKLTKAVSCHQSLYPYLLYYCHSVPKVRVYEADL--------LELNSK 575
Query: 287 EKME-ALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWA 333
+K+ +A+CH+DTS + P F+ +PG VCH++ + + WA
Sbjct: 576 KKINHGIAICHMDTSSWGPSHGAFLALGSKPGRIEVCHWIFENDMNWA 623
>AT1G60390.1 | chr1:22247611-22249556 REVERSE LENGTH=625
Length = 624
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 31/231 (13%)
Query: 113 FLEDALKPGSIIT-PYITGIATRAPFLRRDIADSIPVSTKNFADILAMFSPI-SLVMADG 170
F E LK G+++ P I + FL R+I ++P S+ +I +F + MA
Sbjct: 410 FREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAGI 469
Query: 171 IQSALDTCEHHRPIK-GEERACATSIESVVEFAMSVLGTRDLRAFSPDVPPEGIMPGNMY 229
I SA+ CE RP GE + C S E +++FA SVLG + + +V G+
Sbjct: 470 ISSAVSECE--RPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVV------GSKK 521
Query: 230 KVVAVRTVAGLRGDTVT----CHTMRFPFAVFYCHAINPTRVYAVVLXXXXXXXXXXXXT 285
KVV + V G+ G VT CH +P+ ++YCH++ RVY L
Sbjct: 522 KVV-IGKVNGINGGDVTRAVSCHQSLYPYLLYYCHSVPRVRVYETDLL-----------D 569
Query: 286 PEKME----ALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIW 332
P+ +E +A+CH+DTS + P F+ PG VCH++ + + W
Sbjct: 570 PKSLEKINHGVAICHIDTSAWSPSHGAFLALGSGPGQIEVCHWIFENDMTW 620
>AT1G23760.1 | chr1:8402142-8404147 FORWARD LENGTH=623
Length = 622
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 113 FLEDALKPGSII-TPYITGIATRAPFLRRDIADSIPVSTKNFADILAMFSPISLVMADGI 171
F E LK G++I P I + FL R I +P ST A+I +F +GI
Sbjct: 408 FRESMLKEGTLIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEGI 467
Query: 172 -QSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTRDLRAFSPDV--PPEGIMPGNM 228
A+ CE P E + C S E +++FA SVLG + + V E +M G +
Sbjct: 468 ITDAVRECER-PPTVSETKRCVGSAEDMIDFATSVLGRSVVLRTTESVAGSKEKVMIGKV 526
Query: 229 YKVVAVRTVAGLRGDTVTCHTMRFPFAVFYCHAINPTRVYAVVLXXXXXXXXXXXXTPEK 288
+ R +V+CH +P+ ++YCH++ RVY L
Sbjct: 527 NGINGGRVTK-----SVSCHQSLYPYLLYYCHSVPKVRVYESDLLDPKSKAKIN------ 575
Query: 289 MEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIWA 333
+A+CH+DTS + F+ RPG VCH++ + + WA
Sbjct: 576 -HGIAICHMDTSAWGANHGAFMLLGSRPGQIEVCHWIFENDMNWA 619
>AT1G49320.1 | chr1:18246441-18247817 FORWARD LENGTH=281
Length = 280
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 104/230 (45%), Gaps = 17/230 (7%)
Query: 111 LHFLEDALKPGS--IITPYITGIATRAPFLRRDIADSIPVSTKNFADILAMFSPISLV-M 167
++F + LK G+ +I Y + P L R AD IP + +L FS
Sbjct: 57 MYFTLNDLKLGTKLLIYFYKNDLQKLPPLLTRQQADLIPFTKSKLDFLLDHFSITKDSPQ 116
Query: 168 ADGIQSALDTCEHHRPIKGEERACATSIESVVEFAMSVLGTR-DLRAFSPDV--PPEGIM 224
I+ L C+ + I+GE + C TS+ES+++ +G DL+ + V P + +
Sbjct: 117 GKAIKETLGHCDA-KAIEGEHKFCGTSLESLIDLVKKTMGYNVDLKVMTTKVMVPAQNSI 175
Query: 225 PGNMYKVVAVRTVAGLRG-DTVTCHTMRFPFAVFYCHA-INPTRVYAVVLXXXXXXXXXX 282
++ V L G + CH M +P+AV+YCH +RV+ V L
Sbjct: 176 SYALHNYTFVEAPKELVGIKMLGCHRMPYPYAVYYCHGHKGGSRVFEVNLVTDDGR---- 231
Query: 283 XXTPEKMEALAVCHLDTSRFDPKTPLFVEHNLRPGDASVCHFVSRDSVIW 332
+++ AVCH+DTS +D F + P A VCHF D+++W
Sbjct: 232 ----QRVVGPAVCHMDTSTWDADHVAFKVLKMEPRSAPVCHFFPLDNIVW 277
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,668,314
Number of extensions: 241688
Number of successful extensions: 489
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 480
Number of HSP's successfully gapped: 5
Length of query: 350
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 251
Effective length of database: 8,392,385
Effective search space: 2106488635
Effective search space used: 2106488635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)