BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0273800 Os06g0273800|AK111407
         (180 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52600.1  | chr1:19590612-19592486 FORWARD LENGTH=181          295   1e-80
AT3G15710.1  | chr3:5323564-5324785 REVERSE LENGTH=181            268   1e-72

>AT1G52600.1 | chr1:19590612-19592486 FORWARD LENGTH=181
          Length = 180

 Score =  295 bits (754), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 159/180 (88%)

Query: 1   MGFIGDTIESIRSMQVRQVLAQIISLGMIVTSALIIWKGLIXXXXXXXXXXXXLSGSMEP 60
           MG+IG+T++SI+S+Q+RQ+  Q ISLGMIVTSALIIWK L+            LSGSMEP
Sbjct: 1   MGWIGETVDSIKSIQIRQLFTQAISLGMIVTSALIIWKALMCVTGSESPVVVVLSGSMEP 60

Query: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNF 120
           GFKRGDILFLHMSKDPIR GEIVVFNVDGR+IPIVHRVIKVHER+ + EVD+LTKGDNN+
Sbjct: 61  GFKRGDILFLHMSKDPIRAGEIVVFNVDGRDIPIVHRVIKVHERENTGEVDVLTKGDNNY 120

Query: 121 GDDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 180
           GDDRLLYA GQLWL +HHIMGRAVGFLPYVGWVTIIMTEKPIIKY+LIGALGLLVITSK+
Sbjct: 121 GDDRLLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180



>AT3G15710.1 | chr3:5323564-5324785 REVERSE LENGTH=181
          Length = 180

 Score =  268 bits (686), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 151/180 (83%)

Query: 1   MGFIGDTIESIRSMQVRQVLAQIISLGMIVTSALIIWKGLIXXXXXXXXXXXXLSGSMEP 60
           MGFIG+T++SI+S+++RQVL Q I+LGMIVTSALIIWK LI            LS SMEP
Sbjct: 1   MGFIGETVDSIKSIKIRQVLTQAITLGMIVTSALIIWKALICVTGSESPVVVVLSESMEP 60

Query: 61  GFKRGDILFLHMSKDPIRTGEIVVFNVDGREIPIVHRVIKVHERQESAEVDILTKGDNNF 120
           GF+RGDILFL M+ +PIR GEIVVF+VDGREIPIVHR IKVHER ++  VD+LTKGDNN 
Sbjct: 61  GFQRGDILFLRMTDEPIRAGEIVVFSVDGREIPIVHRAIKVHERGDTKAVDVLTKGDNND 120

Query: 121 GDDRLLYAHGQLWLQQHHIMGRAVGFLPYVGWVTIIMTEKPIIKYLLIGALGLLVITSKE 180
            DD  LYA GQLWL +HHIMGRAVGFLPYVGWVTIIMTEKPIIKY+LIGALGLLVITSK+
Sbjct: 121 IDDIGLYAEGQLWLHRHHIMGRAVGFLPYVGWVTIIMTEKPIIKYILIGALGLLVITSKD 180



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.144    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,411,179
Number of extensions: 127425
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 88
Effective length of database: 8,584,297
Effective search space: 755418136
Effective search space used: 755418136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 108 (46.2 bits)