BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0267600 Os06g0267600|AK106597
         (373 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19190.1  | chr3:6639879-6648274 FORWARD LENGTH=1840           340   8e-94

>AT3G19190.1 | chr3:6639879-6648274 FORWARD LENGTH=1840
          Length = 1839

 Score =  340 bits (872), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 181/376 (48%), Positives = 242/376 (64%), Gaps = 31/376 (8%)

Query: 2    VLGCYNSKDYPRESCSSAFMLELESVRPEPQAPLEDYRXXXXXXXXXXXXDQGQLNFLIS 61
            VLG YNSKD+PR+S S AF LEL++VRP+P+ PLE+ R                      
Sbjct: 1478 VLGYYNSKDHPRDSSSYAFKLELKAVRPDPETPLEENR---------------------- 1515

Query: 62   FFQNDLCNNPNLACENENIDAQSTMYRSDTIADEALLPFFQKFDVKPLVLHINYIPRHFD 121
            FF  +    P ++  +      S   +   I +EALLP+FQKFD+ P+ + ++Y P H D
Sbjct: 1516 FFGANSLEKPVVSMGDSGGSTMSVSVQGHNIIEEALLPYFQKFDIWPVNVRVDYSPHHVD 1575

Query: 122  PVALSKGNYAELLNIFPWKGIDLKLKQVSAMGVYGFNNICEIVAAEWLEDISKNQVHKLL 181
              AL+ G YAEL+N+ PWKGI+L+LK V A G+YG+ N+CE +  EWLED+S+NQ+H+LL
Sbjct: 1576 IAALTGGKYAELVNLVPWKGIELQLKHVHAAGIYGWGNVCETILGEWLEDVSQNQIHQLL 1635

Query: 182  KGLPPIKSLVAVSSGTKKLVSLPIKSYKKDRKLLKGMQRGAVAFIRSVSIEXXXXXXXXX 241
            KG+P ++SL A+ +   KLVS P++SY+KDR+L+KG+QRG VAF+RS+S+E         
Sbjct: 1636 KGIPTVRSLSALYAAALKLVSSPVESYRKDRRLVKGVQRGTVAFLRSISLEAVGLGVHLA 1695

Query: 242  XXXXDMLLKTESALTAIPPPLASREAKRTKDNVRANQPESAQEGLKKAYESLTDGFGRTA 301
                D+LL+ E  + A  P L   +  RTK NVR NQP +A++G+ KA ES+ DG G+TA
Sbjct: 1696 AGAHDILLRAE-YIFASSPSLPQPQG-RTKTNVRHNQPRNAKQGMLKACESIGDGIGKTA 1753

Query: 302  SALIGNPIKVYNRGAGAGSALATAICGAPGAAVAPLSASFRAAHYTLLGIRN-------S 354
            SAL+  P+K Y RG GAGSA AT + G P AA+AP SA  RA H  L+GIRN       S
Sbjct: 1754 SALVRTPLKKYQRGDGAGSAFATVVQGVPTAAIAPASACARAVHSALVGIRNRSIISPFS 1813

Query: 355  LDPERKKESMYKYHGP 370
            LDPE KKESM KY GP
Sbjct: 1814 LDPEHKKESMEKYLGP 1829



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,627,259
Number of extensions: 287786
Number of successful extensions: 725
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,364,969
Effective search space: 2283636537
Effective search space used: 2283636537
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)