BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0264800 Os06g0264800|AK105959
(156 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G01150.1 | chr4:493692-494668 FORWARD LENGTH=165 124 2e-29
AT4G38100.1 | chr4:17887033-17888177 REVERSE LENGTH=194 66 6e-12
AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175 59 9e-10
AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157 49 1e-06
>AT4G01150.1 | chr4:493692-494668 FORWARD LENGTH=165
Length = 164
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 69/91 (75%)
Query: 66 DELVADLKAKWEAIEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTG 125
+EL+ DLK KW+ +E+K T L+Y G AINSVPLLPK++ELVGLGYTG
Sbjct: 74 NELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTG 133
Query: 126 WFVYRYLLFKESRKELATDIETLKKKIAGTE 156
WFVYRYLLFK SRKELA DIE+LKKKIAG+E
Sbjct: 134 WFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
>AT4G38100.1 | chr4:17887033-17888177 REVERSE LENGTH=194
Length = 193
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 84 TFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTGWFVYRYLLFKESRKELAT 143
+ LLY ++ ++PL PK++E+VGLGYT WF RYLLFK +R+EL T
Sbjct: 119 SILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKT 178
Query: 144 DIETLKKKIAGTE 156
+ +KK++ G++
Sbjct: 179 KVSEIKKQVLGSD 191
>AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175
Length = 174
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 68 LVADLKAKWEAIEDKPTFLLYSGXXXXXXXXXXXXXXAINSVPLLPKILELVGLGYTGWF 127
+V + WE ++DK + AI+ +PL+P +LELVG+GYTGWF
Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWF 145
Query: 128 VYRYLLFKESRKELATDIETLKKKIAGTE 156
Y+ L+FK R+ L +++ K I G+
Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILGSS 174
>AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157
Length = 156
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 36 LQPLRLQDAPRLSLLRVRXXXXXXXXXXXGDELVADLKAKWEAIEDKPTFLLYSGXXXXX 95
L PL L P L V+ D +V+ ++ W+ ED+ +
Sbjct: 38 LSPLSLTRNPSSISLMVKASGESSDSSTDLD-VVSTIQNVWDKSEDRLGLIGLGFAGIVA 96
Query: 96 XXXXXXXXXAINSVPLLPKILELVGLGYTGWFVYRYLLFKESRKELATDIETLKKKIA 153
AI+ +P++ ELVG+ ++ WF YRYLLFK R+EL+ + +KK +A
Sbjct: 97 LWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQELS---KIVKKSVA 151
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,183,283
Number of extensions: 62398
Number of successful extensions: 100
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 156
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 66
Effective length of database: 8,639,129
Effective search space: 570182514
Effective search space used: 570182514
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)