BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0264700 Os06g0264700|J100028B14
         (129 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03370.1  | chr5:825798-827020 REVERSE LENGTH=172               68   1e-12

>AT5G03370.1 | chr5:825798-827020 REVERSE LENGTH=172
          Length = 171

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 2/74 (2%)

Query: 55  DWTVETARALGLAGWVRNRRDGTVEALLSGDPARVDEMVSRHLPVGPRAAAVTAVLPSPA 114
           +WTVE A  LG+ GWVRNRRDG+VEAL SG P  VDEM  R    GP AA VT +   P+
Sbjct: 99  NWTVENAEQLGIKGWVRNRRDGSVEALFSGPPEAVDEMHQR-CRRGPPAAMVTGLEAFPS 157

Query: 115 DPVDPAEGFTRKPT 128
              +P   F  + T
Sbjct: 158 TE-EPGSSFEYRST 170



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,906,650
Number of extensions: 55100
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 42
Effective length of database: 8,721,377
Effective search space: 366297834
Effective search space used: 366297834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)