BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0256100 Os06g0256100|AK119768
         (398 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G37630.1  | chr5:14947407-14952546 FORWARD LENGTH=1052         215   3e-56

>AT5G37630.1 | chr5:14947407-14952546 FORWARD LENGTH=1052
          Length = 1051

 Score =  215 bits (548), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 169/293 (57%), Gaps = 9/293 (3%)

Query: 3   DDDLNIGVLDILFSGFLKDDWEFNLEGDNHDNVPTILGEGFAKILLLSENYARISADLHP 62
           ++D+N  +LD+L++G   DDW  + E   +++V   +GEGFAK+LLL E Y  + A  +P
Sbjct: 671 EEDMNFKMLDLLYAGLESDDWRASTESSENESVKATVGEGFAKLLLLGEKYPNLPASFYP 730

Query: 63  IILARLVSLYFMEETKELKRLKQCLSVFFQHYPALSDKHKRCVSSAFVPVMRAMWPGLYG 122
            +L +L++LYF EE+KE  R KQCLSVFF+HY +LS+KHK  VS AFVP++R+MWPG+ G
Sbjct: 731 FVLGKLIALYFSEESKEQLRFKQCLSVFFEHYASLSEKHKGYVSKAFVPLVRSMWPGIDG 790

Query: 123 NVGGSAHAVSKRRKYAAQAARFMVQMVQTPLFSTET----TEQASSSPESQSTKPDMLNN 178
           N   S++ VS +RK A Q +RF++QM+QTPL+  ET      Q + SPE     P     
Sbjct: 791 NTKSSSYVVSNQRKRAVQVSRFILQMMQTPLYKKETRGEPESQVNKSPEDSIQHP----- 845

Query: 179 FDISEEGLAIRIAVEVANCPDXXXXXXXXXXXXXXXXXVLLRFRQSEQKAIKCMRGLINA 238
            + +EEGLAIRIA+E+ +  +                 VLL  + SEQ   K ++ L++ 
Sbjct: 846 LNCTEEGLAIRIAIEMLSFKEKKTAHEKAYVAALCKILVLLHLKPSEQNVTKLLKKLLSL 905

Query: 239 LXXXXXXDKDLMKELSQMASRLRSXXXXXXXXXXXXXXXXIFKKLGLDAGFRL 291
           L      +KDL+KE+  +   L+S                IF+ LG+     +
Sbjct: 906 LADSVRSEKDLLKEVKPVLQHLKSLDACPSEELTQDQANSIFEILGVSYNLEI 958



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,555,075
Number of extensions: 183509
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)