BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0255400 Os06g0255400|AK064894
(168 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199 148 1e-36
AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208 144 2e-35
AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177 139 6e-34
AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183 139 6e-34
AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204 97 4e-21
AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181 95 1e-20
AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203 91 2e-19
>AT1G73540.1 | chr1:27645880-27646571 REVERSE LENGTH=199
Length = 198
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 6/154 (3%)
Query: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGG-VEVLVISSQKKGAAAGDVVMFPKG 63
+V+R GR+LQRY + G R VVGC+PYR + GGG +EVL+IS+QKKG ++ PKG
Sbjct: 44 LVSRTGRDLQRY-NTAGYRQVVGCVPYRYKKHGGGEIEVLLISAQKKGKG----MLLPKG 98
Query: 64 GWELDESVDXXXXXXXXXXXGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRW 123
GWE+DES++ GV G++ SLG+W Y+S+R+ ++G +FPL V+ + + W
Sbjct: 99 GWEIDESIEEAALRETIEEAGVTGQLEESLGKWQYKSKRHTMIHDGHMFPLLVSQQFEIW 158
Query: 124 PEMAARRRSWVSPQQAMDRCPHWWMREALQRFAD 157
PE R+R WVS +A++ C + WMREAL+ F +
Sbjct: 159 PESEFRQRKWVSLSEAIELCQNSWMREALEAFIN 192
>AT1G18300.1 | chr1:6299841-6300799 FORWARD LENGTH=208
Length = 207
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVRG-DGGGVEVLVISSQKKGAAAGDVVMFPKG 63
+V+R GR+LQRY D+ G R VVGC+PYR + + GVE VI A G ++FPKG
Sbjct: 43 LVSRTGRDLQRY-DHAGYRQVVGCVPYRYKKQEVNGVETQVIQVLLVSAQKGKGMLFPKG 101
Query: 64 GWELDESVDXXXXXXXXXXXGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDELDRW 123
GWE DES++ GV GE+ LG+W Y+S+R+ ++G++F L V+ E +RW
Sbjct: 102 GWETDESMEEAALRETIEEAGVTGELEEKLGKWQYKSKRHSIIHDGYMFALLVSQEFERW 161
Query: 124 PEMAARRRSWVSPQQAMDRCPHWWMREALQRFADL 158
PE R+R WVS +A + C +WWMREAL+ F +L
Sbjct: 162 PEAEMRQRRWVSLDEAREVCQNWWMREALEAFINL 196
>AT1G14860.1 | chr1:5124993-5125805 FORWARD LENGTH=177
Length = 176
Score = 139 bits (351), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 99/167 (59%), Gaps = 16/167 (9%)
Query: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGGV-----EVLVISSQKKGAAAGDVVM 59
+V+R GR+ QRY N G R VVGCIPYR++ G EVLVISSQK G +M
Sbjct: 4 LVSRTGRQSQRY--NKGRRQVVGCIPYRLKISSDGTISDEFEVLVISSQK-----GHALM 56
Query: 60 FPKGGWELDESVDXXXXXXXXXXXGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDE 119
FPKGGWELDESV+ GV+G + LG+W + S+ YEGF+FP+ V +E
Sbjct: 57 FPKGGWELDESVEEAASRESLEEAGVVGNVERQLGKWDFLSKSKGTFYEGFMFPMLVKEE 116
Query: 120 LDRWPEMAARRRSWVSPQQAMDRCPHWWMREAL----QRFADLFPQP 162
L+ WPE R+R W+ +A D C WWM+EAL QR + L +P
Sbjct: 117 LELWPEQHLRQRIWMKVDEARDACRDWWMKEALDVLVQRLSLLSLKP 163
>AT2G01670.1 | chr2:296889-297818 REVERSE LENGTH=183
Length = 182
Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 12/163 (7%)
Query: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDGGG-----VEVLVISSQKKGAAAGDVVM 59
+ +R GR+ QRY N G R VVGC+PYR + G VEVLVISSQK G +M
Sbjct: 9 LASRTGRQFQRY--NKGRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQK-----GHALM 61
Query: 60 FPKGGWELDESVDXXXXXXXXXXXGVLGEIGASLGRWCYRSRRYDATYEGFVFPLRVTDE 119
FPKGGWELDESV+ GVLG + LG+W + S+ YEG +FP+ VT++
Sbjct: 62 FPKGGWELDESVEEAASRECLEEAGVLGNVEHQLGKWDFLSKSRGTYYEGLMFPMLVTEQ 121
Query: 120 LDRWPEMAARRRSWVSPQQAMDRCPHWWMREALQRFADLFPQP 162
L+ WPE R+R W++ +A + C WWM+EAL + P
Sbjct: 122 LELWPEQHVRQRIWMNVTEAREACRDWWMKEALDVLVERLSSP 164
>AT1G12880.1 | chr1:4390036-4391046 FORWARD LENGTH=204
Length = 203
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 25/171 (14%)
Query: 3 AVMVARQGRELQRYSDNTGGRMVVGCIPYRV------RGDGG-----GVEVLVISSQKKG 51
+V+ +R GR+ QRY +N R+V GCIPYR+ D G +EVL++SS +
Sbjct: 2 SVLSSRTGRDRQRYDNNF--RLVSGCIPYRLMKADETEEDSGVDFVNKLEVLMVSSPNRH 59
Query: 52 AAAGDVVMFPKGGWELDESVDXXXXXXXXXXXGVLGEI-GASLGRWCYRSRRYDATYE-- 108
++FPKGGWE DE+V GV G + LG W +RS+ E
Sbjct: 60 D-----LVFPKGGWEDDETVLEAASREAIEEAGVKGILRELPLGVWEFRSKSSTVEDECL 114
Query: 109 ----GFVFPLRVTDELDRWPEMAARRRSWVSPQQAMDRCPHWWMREALQRF 155
G++F L+VT+EL+ WPE R R W++ ++A++ C + WM+ AL+ F
Sbjct: 115 GGCKGYMFALKVTEELEDWPERKNRERRWLTVKEALELCRYEWMQRALEEF 165
>AT3G12600.1 | chr3:4004809-4005995 FORWARD LENGTH=181
Length = 180
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 21/162 (12%)
Query: 5 MVARQGRELQRYSDNTGGRMVVGCIPYR-VRGDGGG-------VEVLVISSQKKGAAAGD 56
+VAR GR QRY D G R+V GCIP+R V D G ++VL+ISS ++G
Sbjct: 4 LVARTGRLQQRYED--GSRLVAGCIPFRYVNSDKDGNSESGKVIQVLMISS-----SSGP 56
Query: 57 VVMFPKGGWELDESVDXXXXXXXXXXXGVLGEIGASLGRWCYRSRRYDATY--EGF---- 110
++FPKGGWE DE+V GV G + LG + ++S+ + + EG
Sbjct: 57 GLLFPKGGWENDETVREAAAREAVEEAGVRGILMDFLGNYEFKSKSHQDEFSPEGLCKAA 116
Query: 111 VFPLRVTDELDRWPEMAARRRSWVSPQQAMDRCPHWWMREAL 152
++ L V +EL WPE R R W++ ++A++ C H WM++AL
Sbjct: 117 MYALYVKEELATWPEHETRTRKWLTIEEAVESCRHPWMKDAL 158
>AT3G26690.1 | chr3:9804418-9805398 REVERSE LENGTH=203
Length = 202
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 87/170 (51%), Gaps = 26/170 (15%)
Query: 5 MVARQGRELQRYSDNTGGRMVVGCIPYRVRGDG----------GGVEVLVISSQKKGAAA 54
+ AR GR+ QRY +N R+V GCIPYR+ D ++VL+ISS +
Sbjct: 4 LSARTGRDHQRYDNNF--RLVSGCIPYRLVKDEEEDSTSVDFENKLQVLMISSPNRHD-- 59
Query: 55 GDVVMFPKGGWELDESVDXXXXXXXXXXXGVLGEIGAS-LGRWCYRSRRYDATYE----- 108
++FPKGGWE DE+V GV G + LG W +RS+ +
Sbjct: 60 ---LVFPKGGWEDDETVLEAASREAMEEAGVKGILREDPLGVWEFRSKSSSVEADCCLGG 116
Query: 109 ---GFVFPLRVTDELDRWPEMAARRRSWVSPQQAMDRCPHWWMREALQRF 155
G++F L V +EL WPE R R W++ ++A++ C + WM+ AL+ F
Sbjct: 117 GCKGYMFALEVKEELAIWPEQDDRERRWLNVKEALELCRYEWMQSALEEF 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,491,326
Number of extensions: 127811
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 7
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)