BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0254700 Os06g0254700|AK104598
(215 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70670.1 | chr1:26644830-26645970 FORWARD LENGTH=196 229 7e-61
AT1G70680.1 | chr1:26647341-26648541 FORWARD LENGTH=193 212 1e-55
AT1G23240.1 | chr1:8252894-8254494 REVERSE LENGTH=211 182 1e-46
AT2G33380.1 | chr2:14144984-14146374 REVERSE LENGTH=237 163 6e-41
AT4G26740.1 | chr4:13473791-13475278 REVERSE LENGTH=246 150 4e-37
AT5G55240.1 | chr5:22405963-22407158 FORWARD LENGTH=244 150 5e-37
AT5G29560.1 | chr5:11190543-11191963 REVERSE LENGTH=221 134 5e-32
AT1G23250.1 | chr1:8255233-8256770 REVERSE LENGTH=206 124 3e-29
>AT1G70670.1 | chr1:26644830-26645970 FORWARD LENGTH=196
Length = 195
Score = 229 bits (585), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 112/175 (64%), Positives = 130/175 (74%), Gaps = 1/175 (0%)
Query: 41 LQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIPENTKTGLK 100
LQ+HVAFFDRNKDGI+YPSET+QGFR FIN GL KT P +
Sbjct: 19 LQRHVAFFDRNKDGIVYPSETFQGFRAIGCGYLLSAVASVFINIGLSSKTRP-GKGFSIW 77
Query: 101 LPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELKELLQSNRE 160
PI VKNIH KHGSDSGVYD +GRFV KFEEIF KHAHT DALT++ELK+LL++N+E
Sbjct: 78 FPIEVKNIHLAKHGSDSGVYDKDGRFVASKFEEIFTKHAHTHRDALTNEELKQLLKANKE 137
Query: 161 PKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLFAKMEQEKQSAKKK 215
P D KGWL G+TEWKVL+YLCKDK+G LHKDTVRA YDGSLF K+E+++ S K
Sbjct: 138 PNDRKGWLAGYTEWKVLHYLCKDKNGLLHKDTVRAAYDGSLFEKLEKQRSSKTSK 192
>AT1G70680.1 | chr1:26647341-26648541 FORWARD LENGTH=193
Length = 192
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/179 (60%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 33 VYRSELTPLQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIP 92
V E LQKHVAFFDRNKDGI+YPSET+QGFR FIN L KT P
Sbjct: 12 VVPEEYNFLQKHVAFFDRNKDGIVYPSETFQGFRAIGCGYLLSTFAAVFINISLSSKTRP 71
Query: 93 ENTKTGLKLPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELK 152
PI VKN+ G H SDSGVYD +GRFV KFEEIF KHAHT DALT KELK
Sbjct: 72 -GKGFSFSFPIEVKNVRLGIHSSDSGVYDKDGRFVASKFEEIFAKHAHTHRDALTSKELK 130
Query: 153 ELLQSNREPKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLFAKMEQEKQS 211
ELL++NREP D KG + F EWKVLY LCKDK G LHK+ VRAVYDGSLF ++E+++ S
Sbjct: 131 ELLKANREPNDCKGGILAFGEWKVLYNLCKDKSGLLHKEIVRAVYDGSLFEQLEKQRSS 189
>AT1G23240.1 | chr1:8252894-8254494 REVERSE LENGTH=211
Length = 210
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 117/172 (68%), Gaps = 1/172 (0%)
Query: 35 RSELTPLQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIPEN 94
+ ++T L+KHV+FFDRNKDG +YP ETYQGFR FIN GL KT P
Sbjct: 24 KEKMTALEKHVSFFDRNKDGTVYPWETYQGFRALGTGRLLAAFVAIFINMGLSKKTRPGK 83
Query: 95 TKTGLKLPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELKEL 154
+ L PI VKN H HGSD+ VYD +GRFV KFEEIF KHA T DALT +E++++
Sbjct: 84 GFSPL-FPIDVKNSHLCMHGSDTDVYDDDGRFVESKFEEIFNKHARTHKDALTAEEIQKM 142
Query: 155 LQSNREPKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLFAKME 206
L++NR+P D GWL + EWK+L+ L +DK+G L + +VRA+YDGSLF ++E
Sbjct: 143 LKTNRDPFDITGWLSDYGEWKILHTLAQDKNGLLSEKSVRAIYDGSLFHQLE 194
>AT2G33380.1 | chr2:14144984-14146374 REVERSE LENGTH=237
Length = 236
Score = 163 bits (412), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/178 (44%), Positives = 109/178 (61%), Gaps = 1/178 (0%)
Query: 38 LTPLQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIPENTKT 97
++ +Q+HVAFFD+N DGI+YP ETY+GFR IN T+P +
Sbjct: 59 MSVMQQHVAFFDQNDDGIVYPWETYKGFRDLGFNPISSIFWTLLINLAFSYVTLPSWVPS 118
Query: 98 GLKLPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELKELLQS 157
L LP+Y+ NIHK KHGSDS YD GR+VP E IF K+A T D L+ KE+ + +
Sbjct: 119 PL-LPVYIDNIHKAKHGSDSSTYDTEGRYVPVNLENIFSKYALTVKDKLSFKEVWNVTEG 177
Query: 158 NREPKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLFAKMEQEKQSAKKK 215
NR D GWL EW +LY L KD+DGFL K+ VR +DGSLF ++ +E+ +++K+
Sbjct: 178 NRMAIDPFGWLSNKVEWILLYILAKDEDGFLSKEAVRGCFDGSLFEQIAKERANSRKQ 235
>AT4G26740.1 | chr4:13473791-13475278 REVERSE LENGTH=246
Length = 245
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
Query: 38 LTPLQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIPENTKT 97
L+ LQ+HV+FFD + +GIIYP ETY G R IN L T+P +
Sbjct: 64 LSVLQQHVSFFDIDDNGIIYPWETYSGLRMLGFNIIGSLIIAAVINLTLSYATLPGWLPS 123
Query: 98 GLKLPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELKELLQS 157
PIY+ NIHK KHGSDS YD GRF+P E IF K+A T PD L+ EL E+ +
Sbjct: 124 PF-FPIYIHNIHKSKHGSDSKTYDNEGRFMPVNLELIFSKYAKTLPDKLSLGELWEMTEG 182
Query: 158 NREPKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLF 202
NR+ D GW+ G EW +LY L +D++GFL K+ +R +DGSLF
Sbjct: 183 NRDAWDIFGWIAGKIEWGLLYLLARDEEGFLSKEAIRRCFDGSLF 227
>AT5G55240.1 | chr5:22405963-22407158 FORWARD LENGTH=244
Length = 243
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 1/165 (0%)
Query: 38 LTPLQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIPENTKT 97
L+ LQ+HVAFFD + +GIIYP ET+ GFR IN L T+P +
Sbjct: 63 LSVLQQHVAFFDLDNNGIIYPFETFSGFRLLGFNLLASLILAAGINIALSYATLPGWLPS 122
Query: 98 GLKLPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELKELLQS 157
PIY+ NIHK KHGSDS YD GR+ P E +F K+A T PD L+ EL ++ +
Sbjct: 123 PF-FPIYIHNIHKAKHGSDSKTYDNEGRYTPANLELMFSKYARTIPDKLSLGELWDMTEG 181
Query: 158 NREPKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLF 202
NR+ DF GWL EW VLY L D++GFL K+ +R +DGSLF
Sbjct: 182 NRDAFDFFGWLASKVEWGVLYALASDEEGFLSKEAIRRCFDGSLF 226
>AT5G29560.1 | chr5:11190543-11191963 REVERSE LENGTH=221
Length = 220
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/178 (38%), Positives = 97/178 (54%), Gaps = 20/178 (11%)
Query: 37 ELTPLQKHVAFFDRNKDGIIYPSETYQGFRXXXXXXXXXXXXXXFINGGLGPKTIPENTK 96
+++ LQ+H+AFFD++ DGIIYPSET++GFR ++ + T+P
Sbjct: 61 DMSVLQQHIAFFDQDGDGIIYPSETFRGFRALGFNLVSSIFLTIIVHLTMSYATLPTWMP 120
Query: 97 TGLKLPIYVKNIHKGKHGSDSGVYDANGRFVPEKFEEIFKKHAHTRPDALTDKELKELLQ 156
+ PIY+KNIH+ KHGSD+ YD GR++P E +F K+A T PD LT K
Sbjct: 121 SP-TFPIYIKNIHRAKHGSDTSTYDTEGRYIPANLENMFSKYARTVPDKLTLAASK---- 175
Query: 157 SNREPKDFKGWLGGFTEWKVLYYLCKDKDGFLHKDTVRAVYDGSLFAKMEQEKQSAKK 214
EW VLY+L KD++G L K+ VR +DGSLF + + S KK
Sbjct: 176 ---------------MEWGVLYFLAKDENGHLSKEAVRRCFDGSLFDYCAKARASTKK 218
>AT1G23250.1 | chr1:8255233-8256770 REVERSE LENGTH=206
Length = 205
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/144 (47%), Positives = 87/144 (60%), Gaps = 4/144 (2%)
Query: 63 QGFRXXXXXXXXXXXXXXFINGGLGPKTIPENTKTGLKLPIYVKNIHKGKHGSDSGVYDA 122
+GFR F N GL KT P G LP+++K +D VYD
Sbjct: 50 KGFRALGTGRFMSAFVAVFFNMGLSQKTRPVQL-FGYILPLFLKPFVCTVVTTD--VYDK 106
Query: 123 NGRFVPEKFEEIFKKHAHTRPDALTDKELKELLQSNREPKDFKGWLGGFTEWKVLYYLCK 182
+GRFV KFEEIF KHA T DALT KE+K++L++NREP DF GWL F EWK+L+ L +
Sbjct: 107 DGRFVESKFEEIFNKHARTHKDALTAKEIKQMLKTNREPYDFIGWLSDFIEWKILHTLAQ 166
Query: 183 DKDGFLHKDTVRAVYDGSLFAKME 206
D +G L +D VR VYDGSLF ++E
Sbjct: 167 D-NGLLTEDAVRGVYDGSLFQQLE 189
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,288,326
Number of extensions: 175479
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 8
Length of query: 215
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 121
Effective length of database: 8,529,465
Effective search space: 1032065265
Effective search space used: 1032065265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)