BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0248400 Os06g0248400|AK065783
(767 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32230.1 | chr1:11613427-11615894 FORWARD LENGTH=590 154 3e-37
AT2G35510.1 | chr2:14916898-14919198 REVERSE LENGTH=569 145 1e-34
AT1G70440.1 | chr1:26549354-26550520 REVERSE LENGTH=306 103 3e-22
AT1G23550.1 | chr1:8350912-8352232 FORWARD LENGTH=324 92 1e-18
AT5G62520.1 | chr5:25098071-25099264 FORWARD LENGTH=310 69 8e-12
AT3G47720.1 | chr3:17592771-17593966 FORWARD LENGTH=317 62 2e-09
>AT1G32230.1 | chr1:11613427-11615894 FORWARD LENGTH=590
Length = 589
Score = 154 bits (388), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/412 (26%), Positives = 195/412 (47%), Gaps = 57/412 (13%)
Query: 26 KYRRVEEDNVSSNVESRPLPGSPSQSCCIQPNLAKDCVNYLKSGLPSRIAFYKQGAWCDF 85
K RR+E +N S E+R L + + K+G+ R+ Y+ G W D
Sbjct: 55 KRRRLEGENKLSAYENRSGKA-----------LVRYYTYFKKTGIAKRVMMYENGEWNDL 103
Query: 86 PQKIMESLVEGFKADKSSAVVVMDDQPLLVDFLSMTMVNLKTRKQRSVSWLDGTGKWFFP 145
P+ ++ ++ + ++ + ++DFL M ++++T + ++W+D GK FFP
Sbjct: 104 PEHVICAIQNELEEKSAAIEFKLCGHSFILDFLHMQRLDMETGAKTPLAWIDNAGKCFFP 163
Query: 146 SAF------------------------------FDEGVDESRKLNMG--SEGSGQGLTEG 173
+ D E+ +LN+ S+ SG + +
Sbjct: 164 EIYESDERTNYCHHKCVEDPKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDD 223
Query: 174 --MVPKAPNELVKQAVVETSSPVLQNSCIP-DILRKKIVPVER--GSESFQ--FVQNLFL 226
+ ++ NE +A ++ S L+ + D +V + GSE V+ +F
Sbjct: 224 VPLAQRSSNEHYDEATEDSCSRKLEAAVSKWDETDAIVVSGAKLTGSEVLDKDAVKKMFA 283
Query: 227 SGMGSFASPKNLLHIHRYSAEDVTAQCRLESFARQMRLTRKKIGYADVRYGWLGSRKQDI 286
G S +L + R+S+E A+ RL F +Q+ +T+K G A+VRY WL ++++ +
Sbjct: 284 VGTASLGHVP-VLDVGRFSSE--IAEARLALFQKQVEITKKHRGDANVRYAWLPAKREVL 340
Query: 287 VGVLINGFISTGQTSHSSDMRTGVYLSPENRAFTSVGLCDVDEKGVQYMLLCRAILGNMG 346
V++ G G S G++L+ + + S CDVDE GV+YM+LCR I+GNM
Sbjct: 341 SAVMMQGLGVGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNME 400
Query: 347 TIKPGSQDEFLS---IYDSGVDNCSNPSYYVIWPSKLGTHISLEYLISFRLT 395
++ G + +F S YD+GVD+ +P Y++W + THI E+++ F+L+
Sbjct: 401 LLR-GDKAQFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLS 451
>AT2G35510.1 | chr2:14916898-14919198 REVERSE LENGTH=569
Length = 568
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/384 (26%), Positives = 188/384 (48%), Gaps = 51/384 (13%)
Query: 54 IQPNLAKDCVNYLKSGLPSRIAFYKQGAWCDFPQKIMESLVEGFKADKSSAVVVMDDQPL 113
++ +L + Y K+G+P R+ F++ G W D P I+ + +A +++ +
Sbjct: 71 VEKSLVRYFSYYKKTGVPKRVMFHENGEWIDLPDHILCDIRNDLEAKRATIEFNWCGRHF 130
Query: 114 LVDFLSMTMVNLKTRKQRSVSWLDGTGKWFFPSAF-------------FDEGVDESRKLN 160
L+DFL M ++L+T + ++W+D GK FFP F D + R++
Sbjct: 131 LLDFLHMYRLDLETGVKTQLAWIDIAGKCFFPETFDTLERDGCHHIRGEDPEQHDQREIK 190
Query: 161 MGSEGSGQGLTEGMVPKAPNELVK----------QAVVETSS----PVLQNSC---IPDI 203
+ E + G +P+ +V QAV +S+ ++SC + D
Sbjct: 191 LHIEID---VNSGELPRLNLNVVTDESGDNMDDFQAVQRSSNGPNDEASEDSCSRELDDA 247
Query: 204 LRK----------KIVPVERGSESFQFVQNLFLSGMGSFASPKNLLHIHRYSAEDVTAQC 253
+ K + P E + V+ +F G + ++L ++++S+E A+
Sbjct: 248 VEKWDKTETDRFSGVKPAEEELDK-DAVKQMFALGAATLGHVESL-DVYQFSSE--IAKA 303
Query: 254 RLESFARQMRLTRKKIGYADVRYGWLGSRKQDIVGVLINGFISTGQTSHSSDMRTGVYLS 313
RL F +Q +T+K G A++RY W+ ++K+ + V+++G G S GV+ +
Sbjct: 304 RLSLFQKQADITKKHRGDANIRYAWVPAKKEVLSAVMMHGLGVGGAFIKKSMYGVGVHAA 363
Query: 314 PENRAFTSVGLCDVDEKGVQYMLLCRAILGNMGTIKPGSQDEFL--SIYDSGVDNCSNPS 371
N + S CD+D+ GV++M+LCR I+GNM ++ + F YD+GVD+ +P
Sbjct: 364 --NCPYFSARYCDIDDNGVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPK 421
Query: 372 YYVIWPSKLGTHISLEYLISFRLT 395
+Y+IW + THI E+++SF+L+
Sbjct: 422 HYLIWNMNMNTHIYPEFVVSFKLS 445
>AT1G70440.1 | chr1:26549354-26550520 REVERSE LENGTH=306
Length = 305
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 9/212 (4%)
Query: 189 ETSSPVLQNSCIPDILRKKIVPVERGSESFQFVQNLFLSGMGSFASPKNLLHIHRYSAED 248
E +P+ N+ P+ + + + ++N FLSGMGSFA+ ++ + + +
Sbjct: 20 EIINPISDNA--PNFSGDATILLREATFEHNLIKNCFLSGMGSFATETTIVTVRKILTQR 77
Query: 249 -VTAQCRLESFARQMR-LTRKKIGYADVRYGWLGSRKQDIVGVLINGFISTGQTSHSSDM 306
+T + + F + RK GYA++RYGW K++I V+ GF + +D+
Sbjct: 78 LITTKAKFAVFKLFTEAMKRKNNGYANIRYGWYSGSKEEIDRVITYGFSNREIKKVENDV 137
Query: 307 RT---GVYLSPENRAFTSVGLCDVDEKGVQYMLLCRAILGNMGTIKPGSQDEFLSI--YD 361
+ G++L + + + + DE+G++ +LLCR ILG I GS+ + S +D
Sbjct: 138 GSHGVGIHLVHHRYSLAAALVGEGDEEGIKNILLCRVILGKPEQIVTGSKQSYPSSNQFD 197
Query: 362 SGVDNCSNPSYYVIWPSKLGTHISLEYLISFR 393
SGVDN NP YVIW + ++I Y++SF+
Sbjct: 198 SGVDNLENPRKYVIWSCNMNSYILPTYIVSFK 229
>AT1G23550.1 | chr1:8350912-8352232 FORWARD LENGTH=324
Length = 323
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 208 IVPVERGSESFQFVQNLFLSGMGSFASPKNLLHIHRYSAE-DVTAQCRLESF-ARQMRLT 265
++ + G+ ++ LSGMG +S ++ I + S+E +T + + +F +
Sbjct: 45 LILLGEGNPEHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVA 104
Query: 266 RKKIGYADVRYGWLGSRKQDIVGVLINGFISTGQTSHSSDMRT---GVYLSPENRAFTSV 322
RK G A+V+YGW + +I ++ GF + +D + G++L P + +
Sbjct: 105 RKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAA 164
Query: 323 GLCDVDEKGVQYMLLCRAILGNMGTIKPGSQDEFLSI--YDSGVDNCSNPSYYVIWPSKL 380
+ DE+G++Y+LLCR ILG I GS+ + S +DSGVD+ NP YVIW +
Sbjct: 165 SATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNM 224
Query: 381 GTHISLEYLISFR 393
+ I Y++SFR
Sbjct: 225 NSCILPSYIVSFR 237
>AT5G62520.1 | chr5:25098071-25099264 FORWARD LENGTH=310
Length = 309
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 10/199 (5%)
Query: 237 NLLHIHRYSAEDVTAQCRLESFA---RQMRLTRKKIGYADVRYGWLGSRKQDIVGVLING 293
+L + R +V ++ +L++F +++ G A V+YGW K ++ + G
Sbjct: 68 QILSVLRNGFRNVGSRAKLKTFQVFQEAVQMKHGGDGGAKVKYGWCSVSKHELKTIFEYG 127
Query: 294 FISTGQTSHSSDMRTGVYLSPENRAFTSV-GLCDVDEKGVQYMLLCRAILGNMGTIKPGS 352
F + + G+YLSP+N + E G++++LLCR +LG + GS
Sbjct: 128 F--SEPLRNDGSFGRGLYLSPDNSPLDCLKDSASESEDGMRFLLLCRVLLGKSEIVPQGS 185
Query: 353 QDEFLSI--YDSGVDNCSNPSYYVIWPSKLGTHISLEYLISFRLTPEIQDYLLHLKGLWL 410
S +DSGVD+ + Y++W + + TH+ E+L+ + + L+ W+
Sbjct: 186 TRSCPSSPEFDSGVDDLVSTKKYIVWSTHMNTHVLPEFLVCIKAPFNLTRSPKRLRSPWM 245
Query: 411 CPPPKEVEVDLSTLQPPSE 429
P + LS PPS+
Sbjct: 246 AFPV--LIKALSKFLPPSQ 262
>AT3G47720.1 | chr3:17592771-17593966 FORWARD LENGTH=317
Length = 316
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 23/134 (17%)
Query: 272 ADVRYGWLGSRKQDIVGVLINGFISTGQTSHSSDMRTGVYLSPENRAFTSVGLCDVD--- 328
A V+YG G K+++ +L+ GF + LSP+N C +D
Sbjct: 122 ARVKYGCCGVEKEELKAILMYGF-----------SNNALCLSPDNAPLQ----CMIDPSS 166
Query: 329 ---EKGVQYMLLCRAILGNMGTIKPGSQDEFLSI-YDSGVDNCSNPSYYVIWPSKLGTHI 384
E G+ ++L R I+G + SQ S+ +DSGVD+ ++P+ Y+IW + + TH+
Sbjct: 167 SCNEDGISFLLFSRIIMGKSEVVCSTSQSYPSSMEFDSGVDSLTSPNKYIIWSTHMNTHV 226
Query: 385 SLEYLISFRLTPEI 398
E+++ + TP I
Sbjct: 227 LPEFVVCIK-TPSI 239
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,220,270
Number of extensions: 753916
Number of successful extensions: 1748
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1738
Number of HSP's successfully gapped: 8
Length of query: 767
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 661
Effective length of database: 8,200,473
Effective search space: 5420512653
Effective search space used: 5420512653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)