BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0239000 Os06g0239000|AK071932
         (111 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50110.1  | chr5:20373515-20376068 FORWARD LENGTH=293          119   4e-28

>AT5G50110.1 | chr5:20373515-20376068 FORWARD LENGTH=293
          Length = 292

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 4/100 (4%)

Query: 1   MNLTAVTDEGEVMTRHVADSLAVLPPLERAYR---GDL-GGMRLVDVGSGAGLPGLILAV 56
           MNLTA  +  EVM RH+ DSLA+LPP++  Y     DL   + L+DVGSGAGLPGL+LA+
Sbjct: 85  MNLTATKEADEVMERHIEDSLAILPPIKTCYNLHSSDLFDHINLIDVGSGAGLPGLVLAI 144

Query: 57  ARPSWKFTLLESMQKRCLFLEHAVEVMGLSNVDVVCDRAE 96
           A P W+ TLLES+ KRC+FLEH V V GL+NV +V  RAE
Sbjct: 145 ACPDWRVTLLESINKRCVFLEHVVNVTGLTNVTIVRGRAE 184



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,200,363
Number of extensions: 77097
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)