BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0237000 Os06g0237000|J053060I03
         (40 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40160.1  | chr5:16062726-16064301 REVERSE LENGTH=316           52   6e-08

>AT5G40160.1 | chr5:16062726-16064301 REVERSE LENGTH=316
          Length = 315

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 28/30 (93%)

Query: 6   QDGRTALDISLCFGRDFKSYDLAKLVKLVP 35
           +DG+ ALD++LCFGRDFKSYDL KL+K++P
Sbjct: 282 KDGKLALDLALCFGRDFKSYDLVKLLKIMP 311



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 867,370
Number of extensions: 17154
Number of successful extensions: 46
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 40
Length of database: 11,106,569
Length adjustment: 14
Effective length of query: 26
Effective length of database: 10,722,745
Effective search space: 278791370
Effective search space used: 278791370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)