BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0236300 Os06g0236300|AK119955
(189 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174 98 3e-21
AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183 92 2e-19
AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167 87 5e-18
AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162 86 9e-18
AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160 83 8e-17
>AT1G60010.1 | chr1:22095660-22096434 REVERSE LENGTH=174
Length = 173
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 20/191 (10%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXXX 60
MGNCQA +AA +V+QHP G+++R Y + +E+MR PGHYV+L+ EK
Sbjct: 1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLII--PLPEKNIPATTT 58
Query: 61 XXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXXXXXX 120
++E KLL+P + L+LG AYRLIT EV + L+
Sbjct: 59 TTDDKSE-----RKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLR-----AKKYAK 108
Query: 121 XQHHHLESKPXXXXXXXXGVRINSGGDDHTQLDENLDQHDRDGQRS--SSATHSRHRQWR 178
+ H E+ D+ + ++NL+ D + QRS +++ SR + WR
Sbjct: 109 TKKHQSETS-----KEKKKPSSEKKIDEESDKNQNLETKD-EKQRSVLTNSASSRSKTWR 162
Query: 179 PSLHSIAEVRS 189
PSL SI+E S
Sbjct: 163 PSLQSISEATS 173
>AT5G67620.1 | chr5:26964891-26965720 REVERSE LENGTH=183
Length = 182
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 86/200 (43%), Gaps = 30/200 (15%)
Query: 1 MGNCQAAEAATVVVQHPG-GRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXX 59
MGNCQAAEAATV++ HP +VER+YW+ TA+++M++NPGHYVA+V
Sbjct: 1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVV------------- 47
Query: 60 XXXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXXXXX 119
KLL+P DTLL+G YRL++ +EV
Sbjct: 48 ------TSPTMKNEKGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKL 101
Query: 120 XXQHHHLESKPXXXXXXXXGV-----RINSGGDDHTQLD--ENLDQHDRDG---QRSSSA 169
+ L+ + ++N D + D +N + G R S
Sbjct: 102 LKEGGGLDLTKKKTKHRKKKLDQETGKVNPNSDPNPNQDGADNAVAGENGGDGFMRRSHG 161
Query: 170 THSRHRQWRPSLHSIAEVRS 189
WRP+LHSI E S
Sbjct: 162 GGRGGGGWRPALHSIPEFGS 181
>AT1G10530.1 | chr1:3471805-3472526 REVERSE LENGTH=167
Length = 166
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 83/189 (43%), Gaps = 23/189 (12%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXXX 60
MGNCQA AA +V+QHPGG ++R Y + + EVM PGHYV+L+ EE++
Sbjct: 1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSEEEEKNIPATE 60
Query: 61 XXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXXXXXX 120
+ + +LL+P + L+LG AYRLIT EV + L+
Sbjct: 61 KGDDKKQ-----RKAVRFTRVQLLRPTENLVLGHAYRLITSQEVMKVLR-----EKKSAK 110
Query: 121 XQHHHLESKPXXXXXXXXGVRINSGGDDHTQLDENLDQHDRDGQRSSSATHSRHRQWRPS 180
+ H +E V G R + S+S S + WRPS
Sbjct: 111 TKKHQIEKTTTAKKFSDKKVPEKKQGKQF-----------RVIRNSTSLLKS--KTWRPS 157
Query: 181 LHSIAEVRS 189
L SI+E S
Sbjct: 158 LQSISEATS 166
>AT5G62900.1 | chr5:25248872-25249725 FORWARD LENGTH=162
Length = 161
Score = 86.3 bits (212), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 87/198 (43%), Gaps = 46/198 (23%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALV---------TLRVAE 51
MGNCQAAEAAT V+Q P G+ R Y A+EV++++PGH+VAL+ +LRV
Sbjct: 1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSSAVPHGGSLRVTR 60
Query: 52 EKRXXXXXXXXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXX 111
KLL+P D LLLG YRLI+ +EV + ++
Sbjct: 61 -----------------------------IKLLRPSDNLLLGHVYRLISSEEVMKGIRAK 91
Query: 112 XXXXXXXXXXQHHHLESKPXXXXXXXXGVRINSGGDDHTQLDENLDQHDRDGQRSSSATH 171
H E +R S D TQ + + R + AT+
Sbjct: 92 KSGKMKKI-----HGEFSVAEEEINPLTLRSESASDKDTQ--RRIHEKQRGMMNTGGATN 144
Query: 172 SRHRQWRPSLHSIAEVRS 189
+ R W+PSL SI+E S
Sbjct: 145 -KVRAWQPSLQSISESTS 161
>AT5G50090.1 | chr5:20369961-20370878 FORWARD LENGTH=160
Length = 159
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 80/192 (41%), Gaps = 43/192 (22%)
Query: 1 MGNCQAAEAATVVVQHPGGRVERLYWATTAAEVMRANPGHYVALVTLRVAEEKRXXXXXX 60
MGNCQA + A VV+QHP G+ E+L +A+ VM+ NPGH V+L+
Sbjct: 1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLI-------------- 46
Query: 61 XXXARAEXXXXXXXXXXXXXXKLLKPRDTLLLGQAYRLITVDEVTRALQXXXXXXXXXXX 120
A + KLL+P DTL+LG YRLIT EV + L
Sbjct: 47 STTALSSASSGHGGPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKK-- 104
Query: 121 XQHHHLESKPXXXXXXXXGVRINSGGDDHTQL-----DENLDQHDRDGQRSSSATHSR-H 174
ESK G DD ++ LD D+ + SR
Sbjct: 105 ------ESK---------------GSDDKLEMVKAINSTKLDNEDQLQMKKQEKERSRIS 143
Query: 175 RQWRPSLHSIAE 186
R W+PSL SI+E
Sbjct: 144 RSWQPSLQSISE 155
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,888,770
Number of extensions: 76507
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 5
Length of query: 189
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 96
Effective length of database: 8,556,881
Effective search space: 821460576
Effective search space used: 821460576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)