BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0233800 Os06g0233800|Os06g0233800
(371 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60060.1 | chr1:22139282-22141585 FORWARD LENGTH=387 329 2e-90
AT5G53900.2 | chr5:21881375-21883133 REVERSE LENGTH=378 137 6e-33
AT3G15240.2 | chr3:5133681-5135797 FORWARD LENGTH=363 125 2e-29
AT1G06150.1 | chr1:1867129-1873194 REVERSE LENGTH=1323 74 1e-13
AT2G31280.3 | chr2:13339678-13343424 FORWARD LENGTH=738 72 3e-13
AT2G27230.1 | chr2:11650895-11653840 FORWARD LENGTH=651 62 4e-10
>AT1G60060.1 | chr1:22139282-22141585 FORWARD LENGTH=387
Length = 386
Score = 329 bits (843), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 159/226 (70%), Positives = 179/226 (79%), Gaps = 2/226 (0%)
Query: 1 MDEQLSPVAVTHLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRG 60
M+E L+P+AVTHLLQHTLRSLC ++SQWVYAVFWRILPRNYPPPKWD GAYDR+RG
Sbjct: 1 MEEHLNPLAVTHLLQHTLRSLCIH-ENSQWVYAVFWRILPRNYPPPKWD-GQGAYDRSRG 58
Query: 61 NRRNWILAWEDGFCNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHD 120
NRRNWIL WEDGFCNF GLQPELFFKMSH+
Sbjct: 59 NRRNWILVWEDGFCNFAASAAEMSSGEGSGGGGGSAAYGNSDFQQYQGLQPELFFKMSHE 118
Query: 121 IYNYGEGLIGKVAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIAL 180
IYNYGEGLIGKVAADHSHKW++KEP +QEIN +S+W+N ADS+PRTWEAQFQSGI+TIAL
Sbjct: 119 IYNYGEGLIGKVAADHSHKWIYKEPNDQEINFLSAWHNSADSYPRTWEAQFQSGIKTIAL 178
Query: 181 IAVREGVVQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLLPHPSS 226
I+VREGVVQLG++ KV EDLSYVV LR+K Y+ESIPGVLLPHPSS
Sbjct: 179 ISVREGVVQLGAVHKVIEDLSYVVMLRKKLSYIESIPGVLLPHPSS 224
>AT5G53900.2 | chr5:21881375-21883133 REVERSE LENGTH=378
Length = 377
Score = 137 bits (346), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 108/197 (54%), Gaps = 23/197 (11%)
Query: 14 LQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRGNRRNWILAWEDGF 73
L LRS+C + D W+Y+VFW I PR P+ + GG + + +L WEDGF
Sbjct: 21 LHEALRSVCFNSD---WIYSVFWTIRPR----PR--VRGGNGCKIGDESGSLMLMWEDGF 71
Query: 74 CNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHDIYNYGEGLIGKVA 133
C C ET G L + F KMS +YNYGEGL+GKVA
Sbjct: 72 CGGGRSEDL-------------CLETDIEGHEED-LVRKAFSKMSIQLYNYGEGLMGKVA 117
Query: 134 ADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIALIAVREGVVQLGSM 193
+D HKWVFKEP E E NL + W + D+ P W QF+SGIQTIA+I G++QLGS
Sbjct: 118 SDKCHKWVFKEPSESEPNLANYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSC 177
Query: 194 KKVAEDLSYVVALRRKF 210
K + EDL +V+ +R+ F
Sbjct: 178 KIIPEDLHFVLRMRQMF 194
>AT3G15240.2 | chr3:5133681-5135797 FORWARD LENGTH=363
Length = 362
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 105/208 (50%), Gaps = 25/208 (12%)
Query: 14 LQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRGNRRNWILAWEDGF 73
L LR++C + D W Y+VFW I PR P+ GG + + + +L WEDG+
Sbjct: 34 LHDALRTVCLNTD---WTYSVFWSIRPR----PRVR-GGGNGCKVGDDNGSLMLMWEDGY 85
Query: 74 CNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHDIYNYGEGLIGKVA 133
C E + G + F KMS +YNYGEGL+GKVA
Sbjct: 86 CRGRGGT-----------------EGCYGDMEGEDPVRKSFSKMSIQLYNYGEGLMGKVA 128
Query: 134 ADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIALIAVREGVVQLGSM 193
+D HKWVFKE E E N S W + D+ P W QF+SGI+TIA+I G++QLGS
Sbjct: 129 SDKCHKWVFKEQTESESNASSYWQSSFDAIPSEWNDQFESGIRTIAVIQAGHGLLQLGSC 188
Query: 194 KKVAEDLSYVVALRRKFGYLESIPGVLL 221
K + EDL +V+ +R F L G L
Sbjct: 189 KIIPEDLHFVLRMRHTFESLGYQSGFYL 216
>AT1G06150.1 | chr1:1867129-1873194 REVERSE LENGTH=1323
Length = 1322
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 88/200 (44%), Gaps = 47/200 (23%)
Query: 12 HLLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRGNRRNWILAWED 71
+ LQ LRS+C++ D W YAVFW++ N+ P +L ED
Sbjct: 3 YTLQQILRSICSNTD---WNYAVFWKL---NHHSP------------------MVLTLED 38
Query: 72 GFCNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHDIYNYGEGLIGK 131
+C + + VA KMS+ +++ GEG++G+
Sbjct: 39 VYC----VNHERGLMPESLHGGRHAHDPLGLAVA----------KMSYHVHSLGEGIVGQ 84
Query: 132 VAADHSHKWVFKEPQEQEINLISSWNNPADSHPRTWEAQFQSGIQTIALIAVRE-GVVQL 190
VA H+W+F E + + N WE+Q +GI+TI ++AV GVVQL
Sbjct: 85 VAISGQHQWIFSEYLNDSHSTLQVHNG--------WESQISAGIKTILIVAVGSCGVVQL 136
Query: 191 GSMKKVAEDLSYVVALRRKF 210
GS+ KV ED + V +R F
Sbjct: 137 GSLCKVEEDPALVTHIRHLF 156
>AT2G31280.3 | chr2:13339678-13343424 FORWARD LENGTH=738
Length = 737
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 58/199 (29%)
Query: 15 QHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRGNRRNWILAWEDGFC 74
Q L+S C + D W YAVFW++ RG+R +L ED +
Sbjct: 6 QEILKSFCFNTD---WDYAVFWQL------------------NHRGSR--MVLTLEDAYY 42
Query: 75 NFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHDIYNYGEGLIGKVAA 134
+ +G+A KMS+ +Y+ GEG++G+VA
Sbjct: 43 DHHGTNMHGAHDP--------------LGLA--------VAKMSYHVYSLGEGIVGQVAV 80
Query: 135 DHSHKWVFKEPQEQEINLISSWN--NPADSHPRTWEAQFQSGIQTIALIAVRE-GVVQLG 191
H+WVF E ++N N A WE+Q +GI+TI ++AV GVVQLG
Sbjct: 81 SGEHQWVFPE----------NYNNCNSAFEFHNVWESQISAGIKTILVVAVGPCGVVQLG 130
Query: 192 SMKKVAEDLSYVVALRRKF 210
S+ KV ED+++V +R F
Sbjct: 131 SLCKVNEDVNFVNHIRHLF 149
>AT2G27230.1 | chr2:11650895-11653840 FORWARD LENGTH=651
Length = 650
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 51/214 (23%)
Query: 13 LLQHTLRSLCTSGDDSQWVYAVFWRILPRNYPPPKWDLPGGAYDRTRGNRRNWILAWEDG 72
LL+ LRS+C ++QW YAVFW+I +N W+ + + RR
Sbjct: 4 LLREALRSMCV---NNQWSYAVFWKIGCQNSSLLIWEECYNETESSSNPRR--------- 51
Query: 73 FCNFXXXXXXXXXXXXXXXXXXECEETKQVGVAGGGLQPELFFKMSHDIYNYGEGLIGKV 132
C + + ++V + + +++ I GEGL+G+
Sbjct: 52 LCGLGV----------------DTQGNEKVQLLTNRMM------LNNRIILVGEGLVGRA 89
Query: 133 AADHSHKWVFKEPQEQEINLISSWNNPADSHP----RTWEAQFQSGIQTIALI-AVREGV 187
A H+W+ L +S+N D HP QF +GIQT+A+ V GV
Sbjct: 90 AFTGHHQWI----------LANSFNR--DVHPPEVINEMLLQFSAGIQTVAVFPVVPHGV 137
Query: 188 VQLGSMKKVAEDLSYVVALRRKFGYLESIPGVLL 221
VQLGS + E+L +V ++ L +PG LL
Sbjct: 138 VQLGSSLPIMENLGFVNDVKGLILQLGCVPGALL 171
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,859,317
Number of extensions: 256457
Number of successful extensions: 476
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 6
Length of query: 371
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 271
Effective length of database: 8,364,969
Effective search space: 2266906599
Effective search space used: 2266906599
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)