BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0217700 Os06g0217700|AK062617
(223 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38100.1 | chr4:17887033-17888177 REVERSE LENGTH=194 106 9e-24
AT4G01150.1 | chr4:493692-494668 FORWARD LENGTH=165 90 8e-19
AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175 62 3e-10
AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157 47 9e-06
>AT4G38100.1 | chr4:17887033-17888177 REVERSE LENGTH=194
Length = 193
Score = 106 bits (265), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 68/83 (81%)
Query: 141 KLDFKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFK 200
KLD +T + ++YGSGA +A ++ SA+VS++++IPLFPK++++VGLGYT+WF+TRYLLFK
Sbjct: 111 KLDSDKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFK 170
Query: 201 ENRDELFVKVDDLKRKITGYGDE 223
NR+EL KV ++K+++ G E
Sbjct: 171 RNREELKTKVSEIKKQVLGSDSE 193
>AT4G01150.1 | chr4:493692-494668 FORWARD LENGTH=165
Length = 164
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 55/76 (72%)
Query: 144 FKETSTFVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFKENR 203
+ ST ++YG GA +A W+ S VV AI+S+PL PK++++VGLGYT WF RYLLFK +R
Sbjct: 87 LENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSR 146
Query: 204 DELFVKVDDLKRKITG 219
EL ++ LK+KI G
Sbjct: 147 KELAEDIESLKKKIAG 162
>AT2G46820.1 | chr2:19243729-19244870 FORWARD LENGTH=175
Length = 174
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 154 GSGAF---IAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFKENRDELFVKV 210
GS AF +A W + ++SAID +PL P +L++VG+GYT WF+ + L+FK +R+ LF KV
Sbjct: 104 GSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKV 163
Query: 211 DDLKRKITG 219
+ I G
Sbjct: 164 KSTYKDILG 172
>AT1G52220.1 | chr1:19453770-19454605 REVERSE LENGTH=157
Length = 156
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 150 FVMYGSGAFIAGWILSAVVSAIDSIPLFPKILQIVGLGYTIWFSTRYLLFKENRDEL 206
+ G +A W +++AID +P+ ++VG+ ++ WF+ RYLLFK +R EL
Sbjct: 86 LIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTWFTYRYLLFKPDRQEL 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,244,603
Number of extensions: 142158
Number of successful extensions: 271
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 4
Length of query: 223
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 128
Effective length of database: 8,502,049
Effective search space: 1088262272
Effective search space used: 1088262272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)