BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0207700 Os06g0207700|J065166C13
(207 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G17700.1 | chr3:6049074-6052449 FORWARD LENGTH=765 94 3e-20
AT3G17690.1 | chr3:6045382-6048339 FORWARD LENGTH=730 74 4e-14
AT4G30360.1 | chr4:14855060-14857779 REVERSE LENGTH=721 50 7e-07
AT1G19780.1 | chr1:6833885-6836578 REVERSE LENGTH=754 50 9e-07
AT1G15990.1 | chr1:5491304-5493772 REVERSE LENGTH=710 50 1e-06
AT2G28260.1 | chr2:12049989-12052453 FORWARD LENGTH=679 49 1e-06
>AT3G17700.1 | chr3:6049074-6052449 FORWARD LENGTH=765
Length = 764
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 110/229 (48%), Gaps = 30/229 (13%)
Query: 2 SGQERDDVPMLEL---------QRFPTRS--VSMCIPVRDDIYEDS---IISHSGPIFTP 47
S E DD+PML + + F +RS VS+ P D+ ++ ++GP+ T
Sbjct: 3 SHNENDDIPMLPISDPSSRTRARAFTSRSRSVSLSNPTSSIEGFDTSTVVLGYTGPLRTQ 62
Query: 48 A--PTQYTSVAIPSGNRDMLDKLPRPKVKSKPHVVTPEE------VGISNWPYDQHVPKN 99
P S + S + LP P S PE + N D+ V K+
Sbjct: 63 RRPPLVQMSGPLTSTRKHEPLFLPHPSSDSVGVSSQPERYPSFAALEHKNSSEDEFVLKH 122
Query: 100 KHLMMYSEPLGLCDNPDCVDCPRACKNKRHFQ----RSLAPFDNKFHNILYGYGDRWKKK 155
+L+ S LG+C++P C CP + N++ Q R A FD+ FHN LY W ++
Sbjct: 123 ANLLR-SGQLGMCNDPYCTTCP-SYYNRKAAQIPTSRVSALFDSTFHNALYDDAKGWARR 180
Query: 156 -AGHYLSYIP-IMKPHDKAVHRWNQFFVISCLLAIFNDPLFFFLLSVDK 202
A Y+P IM PH K V W +FF +SCLLAIF DPLFFFL+ V +
Sbjct: 181 FASSVNRYLPGIMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQE 229
>AT3G17690.1 | chr3:6045382-6048339 FORWARD LENGTH=730
Length = 729
Score = 74.3 bits (181), Expect = 4e-14, Method: Composition-based stats.
Identities = 64/194 (32%), Positives = 92/194 (47%), Gaps = 21/194 (10%)
Query: 20 RSVSMCIPVRD-DIYEDSIIS--HSGPIFTP---APTQYTSVAIPSGNRDMLDKLPRPKV 73
RSVS+ P D +++S ++ ++GP+ T P S I S R + L P
Sbjct: 12 RSVSLSNPSFSIDGFDNSTVTLGYTGPLRTQRIRPPLVQMSGPIHSTRRT--EPLFSPSP 69
Query: 74 KSKPHVVTPEEVGISNWPYDQHVPKNKHLMMYSEPLGLCDNPDCVDCPRACKNKR---HF 130
+ P + +V P D V KN +L+ S LG+C++P C CP + H
Sbjct: 70 QESPDSSSTVDVP----PEDDFVFKNANLLR-SGQLGMCNDPYCTTCPSYYNRQAAQLHT 124
Query: 131 QRSLAPFDNKFHNILYGYGDRWKKK-AGHYLSYIP-IMKPHDKAVHRWNQFFVISCLLAI 188
R A ++F +LYG W K+ A +P IM PH K V W + S L+AI
Sbjct: 125 SRVSA---SRFRTVLYGDARGWAKRFASSVRRCLPGIMNPHSKFVQVWTRVLAFSSLVAI 181
Query: 189 FNDPLFFFLLSVDK 202
F DPLFFFLL + +
Sbjct: 182 FIDPLFFFLLLIQQ 195
>AT4G30360.1 | chr4:14855060-14857779 REVERSE LENGTH=721
Length = 720
Score = 50.4 bits (119), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Query: 98 KNKHLMMYSEPLGLCDNPDCVDCPRACKNKRHFQRSLAPFDNKFHNILYGYGDRWKKKAG 157
K+K LM YSE + V+ P + K +L P DN Y D K K+
Sbjct: 5 KDKLLMFYSEGKESKEAKWAVNDPMSKSYKLSLPSALRP-DNLLPGNRLRYTDASKSKSS 63
Query: 158 HYLSYIPIMKPHDKAVHRWNQFFVISCLLAIFNDPLFFFLLSV 200
Y I+ P + V +WN F++SC++A+F DPL+FF+ ++
Sbjct: 64 KVSWYKTILDPGSEIVLKWNWVFIVSCMVALFIDPLYFFVPAI 106
>AT1G19780.1 | chr1:6833885-6836578 REVERSE LENGTH=754
Length = 753
Score = 50.1 bits (118), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 165 IMKPHDKAVHRWNQFFVISCLLAIFNDPLFFFLLSVDKVR 204
I P DK + WN+ FVISC+LA+ DPLFF+L VD +
Sbjct: 97 IFDPQDKTLLLWNRMFVISCILAVSVDPLFFYLPIVDNSK 136
>AT1G15990.1 | chr1:5491304-5493772 REVERSE LENGTH=710
Length = 709
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 165 IMKPHDKAVHRWNQFFVISCLLAIFNDPLFFFLLSVD 201
I P DK + WN+ FVISC+LA+ DPLFF+L VD
Sbjct: 61 IFDPQDKTLLVWNRLFVISCILAVSVDPLFFYLPIVD 97
>AT2G28260.1 | chr2:12049989-12052453 FORWARD LENGTH=679
Length = 678
Score = 49.3 bits (116), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 165 IMKPHDKAVHRWNQFFVISCLLAIFNDPLFFFL 197
I+ P + + RWN+ F+I+CL+++F DPLFFFL
Sbjct: 68 ILDPRGQTIRRWNKIFLIACLVSLFVDPLFFFL 100
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.140 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,359,730
Number of extensions: 255768
Number of successful extensions: 521
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 7
Length of query: 207
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 113
Effective length of database: 8,529,465
Effective search space: 963829545
Effective search space used: 963829545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)