BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0199800 Os06g0199800|AK111880
         (321 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48270.1  | chr1:17828314-17830214 REVERSE LENGTH=327          414   e-116

>AT1G48270.1 | chr1:17828314-17830214 REVERSE LENGTH=327
          Length = 326

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/290 (67%), Positives = 225/290 (77%)

Query: 17  DRDVLDAVGTXXXXXXXXXXXFIVLCYLLFRELRKFSFKLVYFLAVSDMFCSLFTIMGGP 76
           DR ++ A+ T           FIVLCY LF+ELRKFSFKLV++LA+SDM CS F I+G P
Sbjct: 15  DRSIITAINTGASSLSFVGSAFIVLCYCLFKELRKFSFKLVFYLALSDMLCSFFLIVGDP 74

Query: 77  SNAFYCFAHDYSAHFFCVASFLWTTTIAFTLHRTVVKHKTDVEEFGSIFHLYVWGTSLAT 136
           S  F C+A  Y+ HFFCVASFLWTTTIAFTLHRTVVKHKTDVE+  ++FHLYVWGTSL  
Sbjct: 75  SKGFICYAQGYTTHFFCVASFLWTTTIAFTLHRTVVKHKTDVEDLEAMFHLYVWGTSLVV 134

Query: 137 TVLRSIGSDYGRPGTWCWIQQGSMGKVLHLVTFYLPLWGAILYNGYTYFQVNRMINNATR 196
           TV+RS G+++   G WCW Q G  GK +H +TFY PLWGAILYNG+TYFQV RM+ NA R
Sbjct: 135 TVIRSFGNNHSHLGPWCWTQTGLKGKAVHFLTFYAPLWGAILYNGFTYFQVIRMLRNARR 194

Query: 197 MAVGISDRSIQSDVRADKKAFNRWGYYPLILIGSWAFATINRVHDFANPGHKIFWLSILD 256
           MAVG+SDR  Q D RA+ K  NRWGYYPLILIGSWAF TINR+HDF  PGHKIFWLS+LD
Sbjct: 195 MAVGMSDRVDQFDNRAELKVLNRWGYYPLILIGSWAFGTINRIHDFIEPGHKIFWLSVLD 254

Query: 257 VGFAGLMGLFNSIAYGLNSSVRRAIAERLDMYLPERFKRSLPTLTRFKSQ 306
           VG A LMGLFNSIAYG NSSVRRAI ERL+++LPER  R LP+  R K+ 
Sbjct: 255 VGTAALMGLFNSIAYGFNSSVRRAIHERLELFLPERLYRWLPSNFRPKNH 304



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.140    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,173,114
Number of extensions: 243886
Number of successful extensions: 670
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,392,385
Effective search space: 1863109470
Effective search space used: 1863109470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 112 (47.8 bits)