BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0199500 Os06g0199500|AK064613
         (220 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18030.1  | chr3:6167883-6168629 REVERSE LENGTH=210            309   7e-85
AT1G48605.1  | chr1:17969395-17970080 REVERSE LENGTH=202          307   3e-84

>AT3G18030.1 | chr3:6167883-6168629 REVERSE LENGTH=210
          Length = 209

 Score =  309 bits (792), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 143/184 (77%), Positives = 163/184 (88%)

Query: 18  PSKPRVLLAASGSVAAIKFESLCRSFSEWAEVRAVATKASLHFIDRTSLPSNIILYTDDD 77
           P KPRVLLAASGSVAAIKF +LC  F+EWAEVRAV TK+SLHF+D+ SLP  + LYTD+D
Sbjct: 17  PRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDED 76

Query: 78  EWSTWKKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLF 137
           EWS+W KIGD VLHIELR+WAD++VIAPLSANTL KIAGGLCDNLLTCI+RAWDY+KPLF
Sbjct: 77  EWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLF 136

Query: 138 VAPAMNTFMWNNPFTSRHLETINLLGISLVPPITKRLACGDYGNGAMAEPSVIDSTVRLA 197
           VAPAMNT MWNNPFT RHL +++ LGI+L+PPI KRLACGDYGNGAMAEPS+I STVRL 
Sbjct: 137 VAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIYSTVRLF 196

Query: 198 CKRQ 201
            + Q
Sbjct: 197 WESQ 200



>AT1G48605.1 | chr1:17969395-17970080 REVERSE LENGTH=202
          Length = 201

 Score =  307 bits (786), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 142/182 (78%), Positives = 164/182 (90%)

Query: 20  KPRVLLAASGSVAAIKFESLCRSFSEWAEVRAVATKASLHFIDRTSLPSNIILYTDDDEW 79
           KPR+LLAASGSVA+IKF +LC  FSEWAEV+AVA+K+SL+F+D+ SLP N+ LYTD+DEW
Sbjct: 11  KPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVTLYTDEDEW 70

Query: 80  STWKKIGDEVLHIELRKWADIMVIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFVA 139
           S+W KIGD VLHIELR+WAD+M+IAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFVA
Sbjct: 71  SSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLFVA 130

Query: 140 PAMNTFMWNNPFTSRHLETINLLGISLVPPITKRLACGDYGNGAMAEPSVIDSTVRLACK 199
           PAMNT MWNNPFT RHL  ++ LGI+L+PPI K+LACGDYGNGAMAEPS+I STVRL  +
Sbjct: 131 PAMNTLMWNNPFTERHLVLLDELGITLIPPIKKKLACGDYGNGAMAEPSLIYSTVRLFWE 190

Query: 200 RQ 201
            Q
Sbjct: 191 SQ 192



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,228,289
Number of extensions: 210841
Number of successful extensions: 436
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 2
Length of query: 220
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 125
Effective length of database: 8,502,049
Effective search space: 1062756125
Effective search space used: 1062756125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)