BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0198700 Os06g0198700|AK060012
         (173 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16444.1  | chr4:9274791-9276056 REVERSE LENGTH=179            121   2e-28

>AT4G16444.1 | chr4:9274791-9276056 REVERSE LENGTH=179
          Length = 178

 Score =  121 bits (304), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 95/162 (58%)

Query: 3   LAATFVFLLVSALQMLDQVLDLVKKRGSITDDQLKLRLEITQILKEASALSTPSTFXXXX 62
           LAA   F++V   Q+L + LD +KK+GS    + +LR EI Q+L+EASALS P+TF    
Sbjct: 13  LAAPLTFVVVVVFQLLSKWLDQLKKKGSKNTRESELRTEIKQLLREASALSQPATFAQAA 72

Query: 63  XXXXXXXXXXXXXXXXXXXDIKGKQSLYNQYGRVMLFSKVLIYGLLILWFWSAPVTTVPK 122
                                K  +  Y+ YG+ +L SKV+IY +L+L FW  P+  + K
Sbjct: 73  KLRRSAATKEKELAQYLEQHHKEIKLSYDMYGKGLLASKVVIYLILVLCFWRTPIAIIAK 132

Query: 123 HLLQPFGRMFSWRGVDAATGRVVVGIIPWLLLTSRVSKLLCQ 164
            L+QPFG + SW      TG V+VGIIPWL+L++RVSK +C+
Sbjct: 133 QLVQPFGTLLSWGTGGHMTGHVMVGIIPWLILSNRVSKYVCR 174



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,848,527
Number of extensions: 90925
Number of successful extensions: 307
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 81
Effective length of database: 8,584,297
Effective search space: 695328057
Effective search space used: 695328057
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 108 (46.2 bits)