BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0198500 Os06g0198500|J075080L11
         (196 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G19130.1  | chr1:6609545-6610555 REVERSE LENGTH=193            222   1e-58

>AT1G19130.1 | chr1:6609545-6610555 REVERSE LENGTH=193
          Length = 192

 Score =  222 bits (565), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 140/183 (76%), Gaps = 3/183 (1%)

Query: 11  AAEIVAMLDLQRHPDGGFYLETFRDPSISLPKSALPPRYKVDRSGSSAIYFLLPAGEIAK 70
           ++EIV  L+L+ H +GGF+ ETFRD S+ L  S LPP +KVDR+ S++IYFLLP+G +++
Sbjct: 8   SSEIVGKLNLRAHQEGGFFAETFRDSSVFLSTSQLPPTFKVDRAVSTSIYFLLPSGSVSR 67

Query: 71  LHRIPCAETWHYYMGEPLTVFEVHDDGQIKMTVVGPDLRHG-QRPQYTVPPNVWFGAFLT 129
           LHRIP AETWH+Y+GEPLTV E++DDG++K T +GPDL  G Q+PQYTVPPNVWFG+F T
Sbjct: 68  LHRIPMAETWHFYLGEPLTVVELYDDGKLKFTCLGPDLFEGDQKPQYTVPPNVWFGSFPT 127

Query: 130 CDIESFTEDGSVFVKTPGRDPELHYSFVGVTCAPAFQFEDNEMATRETMKTLAPKAEAFI 189
            D+  F++DG++ +K   RD E H+S VG TCAPAFQFED E+A R  + +  P+ E+ I
Sbjct: 128 KDVH-FSQDGAL-LKAEARDSENHFSLVGCTCAPAFQFEDFELAKRSDLLSRFPQHESLI 185

Query: 190 NYL 192
             L
Sbjct: 186 TML 188



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,630,542
Number of extensions: 200159
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)