BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0196600 Os06g0196600|AK060515
(465 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G46290.3 | chr5:18774439-18776629 REVERSE LENGTH=490 717 0.0
AT1G74960.2 | chr1:28152564-28155948 REVERSE LENGTH=542 466 e-131
AT2G04540.1 | chr2:1581521-1584635 REVERSE LENGTH=462 267 1e-71
>AT5G46290.3 | chr5:18774439-18776629 REVERSE LENGTH=490
Length = 489
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/436 (79%), Positives = 380/436 (87%), Gaps = 18/436 (4%)
Query: 46 ETDPRKRVVITGMGLVSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFS 105
ETDP+KRVVITGMGLVSVFGNDVDAYY++LL+GESGI IDRFDAS FPTRF GQIRGFS
Sbjct: 56 ETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFS 115
Query: 106 SEGYIDGKNDRRLDDCLRYCIVSGKKALESAGLALGSKSMDKIEKTRAXXXXXXXXXXXX 165
SEGYIDGKN+RRLDDCL+YCIV+GKKALESA L G ++ I+K +A
Sbjct: 116 SEGYIDGKNERRLDDCLKYCIVAGKKALESANL--GGDKLNTIDKRKAGVLVGTGMGGLT 173
Query: 166 XFSDGVQNLIEKGHRKITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYA 225
FS+GVQNLIEKGHR+I+PFFIPYAITNMGSALL +D+G MGPNYSISTACATSNYCFYA
Sbjct: 174 VFSEGVQNLIEKGHRRISPFFIPYAITNMGSALLAIDLGLMGPNYSISTACATSNYCFYA 233
Query: 226 AANHIRRGEADVMIAGGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMG 285
AANHIRRGEAD+MIAGGTEAAIIPIG+GGFVACRALSQRNDDP+TASRPWD+ RDGFVMG
Sbjct: 234 AANHIRRGEADMMIAGGTEAAIIPIGLGGFVACRALSQRNDDPQTASRPWDKARDGFVMG 293
Query: 286 EGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGV 345
EGAGVLVMESLEHAMKR API+AEYLGGAVNCDA+HMTDPR+DGLGVSSCI++ L DAGV
Sbjct: 294 EGAGVLVMESLEHAMKRGAPIVAEYLGGAVNCDAHHMTDPRADGLGVSSCIERCLEDAGV 353
Query: 346 APEEVNYINAHATSTLAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIAT 405
+PEEVNYINAHATSTLAGDLAE+NAI++VFK S IKINATKSMIGHCLGAAGGLEAIAT
Sbjct: 354 SPEEVNYINAHATSTLAGDLAEINAIKKVFKSTSGIKINATKSMIGHCLGAAGGLEAIAT 413
Query: 406 VKAITTGWVHPSINQF----------------NPEPAVEFDTVPNVKKQHEVNVGISNSF 449
VKAI TGW+HPSINQF NPE AV+FDTVPN KKQHEV+V ISNSF
Sbjct: 414 VKAINTGWLHPSINQFVRITGSQEKASLIPLSNPEQAVDFDTVPNEKKQHEVDVAISNSF 473
Query: 450 GFGGHNSVVVFAPFKP 465
GFGGHNSVV F+ FKP
Sbjct: 474 GFGGHNSVVAFSAFKP 489
>AT1G74960.2 | chr1:28152564-28155948 REVERSE LENGTH=542
Length = 541
Score = 466 bits (1198), Expect = e-131, Method: Compositional matrix adjust.
Identities = 229/416 (55%), Positives = 303/416 (72%), Gaps = 4/416 (0%)
Query: 50 RKRVVITGMGLVSVFGNDVDAYYDRLLAGESGIGPIDRFDASNFPTRFAGQIRGFSSEGY 109
++RVV+TGMG+ + G+D +Y+ LL G SGI I+ FD S FPTR AG+I+ FS+EG+
Sbjct: 129 QRRVVVTGMGVETSLGHDPHTFYENLLQGNSGISQIENFDCSEFPTRIAGEIKSFSTEGW 188
Query: 110 IDGKNDRRLDDCLRYCIVSGKKALESAGLALGSKSMDKIEKTRAXXXXXXXXXXXXXFSD 169
+ K +R+D + Y + +GKKAL G+ + M + +KT+ F D
Sbjct: 189 VAPKLSKRMDKFMLYLLTAGKKALADGGVT--DEVMAEFDKTKCGVLIGSAMGGMKVFYD 246
Query: 170 GVQNLIEKGHRKITPFFIPYAITNMGSALLGMDIGFMGPNYSISTACATSNYCFYAAANH 229
++ L ++K+ PF +P+A TNMGSA+L MD+G+MGPNYSISTACATSN+C +ANH
Sbjct: 247 AIEAL-RISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNSANH 305
Query: 230 IRRGEADVMIAGGTEAAIIPIGVGGFVACRALSQRNDDPKTASRPWDQDRDGFVMGEGAG 289
I +GEADVM+ GG++A IIPIG+GGFVACRALSQRN+DP ASRPWD +RDGFVMGEGAG
Sbjct: 306 IIKGEADVMLCGGSDAVIIPIGLGGFVACRALSQRNNDPTKASRPWDTNRDGFVMGEGAG 365
Query: 290 VLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGVSSCIKQSLADAGVAPEE 349
VL++E LEHA KR A I AE+LGG+ CDAYHMT+P DG GV CI+++LA AG++ E+
Sbjct: 366 VLLLEELEHAKKRGATIYAEFLGGSFTCDAYHMTEPHPDGAGVILCIERALASAGISKEQ 425
Query: 350 VNYINAHATSTLAGDLAEVNAIRQVFKDPSEIKINATKSMIGHCLGAAGGLEAIATVKAI 409
+NYINAHATST AGD+ E A+ F E+K+N+TKSMIGH LGAAG +EA+ATV+AI
Sbjct: 426 INYINAHATSTHAGDIKEYQALAHCFGQNPELKVNSTKSMIGHLLGAAGAVEAVATVQAI 485
Query: 410 TTGWVHPSINQFNPEPAVEFDTVPNVKKQH-EVNVGISNSFGFGGHNSVVVFAPFK 464
TGWVHP+IN NP+ V+ + KK+ ++ +SNSFGFGGHNS ++FAP+K
Sbjct: 486 RTGWVHPNINLENPDSGVDTKLLVGPKKERLDIKAALSNSFGFGGHNSSIIFAPYK 541
>AT2G04540.1 | chr2:1581521-1584635 REVERSE LENGTH=462
Length = 461
Score = 267 bits (682), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 159/433 (36%), Positives = 239/433 (55%), Gaps = 26/433 (6%)
Query: 51 KRVVITGMGLVSVFGNDVDAYYDRLLAGESGIG--PIDRFDASNFPT--------RFAGQ 100
+RVV+TG+G+V+ G V+ + RL+ GE GI +D +F + + +
Sbjct: 31 RRVVVTGLGMVTPLGRGVETTWRRLIDGECGIRGLTLDDLKMKSFDEETKLYTFDQLSSK 90
Query: 101 IRGFSSEGYIDGK-------NDRRLDDCLRYCIVSGKKALESAGLALGSKSMDKIEKTRA 153
+ F G G+ N + + + + Y + + +AL A ++ EK R
Sbjct: 91 VAAFVPYGSNPGEFDEALWLNSKAVANFIGYAVCAADEALRDAEWL----PTEEEEKERT 146
Query: 154 XXXXXXXXXXXXXFSDGVQNLIEKGHRKITPFFIPYAITNMGSALLGMDIGFMGPNYSIS 213
+ Q + EK R+++PFFIP + NM S + M GF GPN++
Sbjct: 147 GVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAV 206
Query: 214 TACATSNYCFYAAANHIRRGEADVMIAGGTEAAIIPIGVGGFVACRALSQR-NDDPKTAS 272
TACAT + A I+ G+ADVM+AGGTE++I + V GF RALS + N P+ AS
Sbjct: 207 TACATGAHSIGDATRMIQFGDADVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQEAS 266
Query: 273 RPWDQDRDGFVMGEGAGVLVMESLEHAMKRDAPIIAEYLGGAVNCDAYHMTDPRSDGLGV 332
RP+D DRDGFV+GEG+GV+V+E EHA +R A I AE G ++ DA+H+T P DG G
Sbjct: 267 RPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGA 326
Query: 333 SSCIKQSLADAGVAPEEVNYINAHATSTLAGDLAEVNAIRQVFKDPS---EIKINATKSM 389
+ ++L +G+ P +++Y+NAHATST GD E AI+ VF + + + ++TK
Sbjct: 327 VLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGA 386
Query: 390 IGHCLGAAGGLEAIATVKAITTGWVHPSINQFNPEPAVEFDTVP-NVKKQHEVNVGISNS 448
GH LGAAG +EAI ++ AI G ++N NP+P + +P K+ V +SNS
Sbjct: 387 TGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNS 446
Query: 449 FGFGGHNSVVVFA 461
FGFGG N+ ++FA
Sbjct: 447 FGFGGTNASLLFA 459
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,040,543
Number of extensions: 368962
Number of successful extensions: 780
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 3
Length of query: 465
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 363
Effective length of database: 8,310,137
Effective search space: 3016579731
Effective search space used: 3016579731
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)